ENCORE eCLIP:311

XRCC6 eCLIP in HepG2

Experiment Information (Status: Released)

	311	311-control
Exp_UID	311	311
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR571ROL	ENCSR044NGV
ENCODE_alias	gene-yeo:311	gene-yeo:311-control
RBP	XRCC6	XRCC6
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB462RZD	ENCAB462RZD
Antibody	A302-624A	A302-624A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	171	197

Replicate Information


Rep_UID	311_01	311_02	311_INPUT
Exp UID	311	311	311
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB134VGD	ENCLB097KHV	ENCLB150JWV
ENCODE_alias	gene-yeo:311_01	gene-yeo:311_02	gene-yeo:311_INPUT
Biosample Name	HepG2_082214_batchB	HepG2_032315	HepG2_032315
Biosample_ENCODE_Accession	ENCBS861HMN	ENCBS859FFE	ENCBS859FFE
Biosample_ENCODE_Alias	gene-yeo:HepG2_082214_batchB	gene-yeo:HepG2_032315	gene-yeo:HepG2_032315
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2014-07-23	2015-03-02	2015-03-02
Culture_End_Date	2014-08-22	2015-03-23	2015-03-23
Passage	4	4	4

QC Stats

Experiment QC

	311	311-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	311_01	311_02	311_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	311_01	311_02	311_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A01	C01	none
inline_barcode_2	B06	D08fixed	none
i5_barcode	502	502	502
i7_barcode	705	705	706

Sequencing Information


Rep_UID	311_01	311_02	311_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/311.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	311	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
311.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	311	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=311)