Home
NEWS
Summary
Data Files
Search
FAQ
Admin Login
Top
LARP7
eCLIP
in HepG2
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
298
298-control
Exp_UID
298
298
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR961OKA
ENCSR095SIV
ENCODE_alias
gene-yeo:298
gene-yeo:298-control
RBP
LARP7
LARP7
Cell_Line
HepG2
HepG2
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB568DRS
ENCAB568DRS
Antibody
A303-723A
A303-723A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
101
125
Replicate Information
Rep_UID
298_01
298_02
298_INPUT
Exp UID
298
298
298
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB179JQJ
ENCLB189TRV
ENCLB838EJE
ENCODE_alias
gene-yeo:298_01
gene-yeo:298_02
gene-yeo:298_INPUT
Biosample Name
HepG2_032015
HepG2_032315
HepG2_032015
Biosample_ENCODE_Accession
ENCBS548DJV
ENCBS859FFE
ENCBS548DJV
Biosample_ENCODE_Alias
gene-yeo:HepG2_032015
gene-yeo:HepG2_032315
gene-yeo:HepG2_032015
Cell_Line
HepG2
HepG2
HepG2
Culture_Start_Date
2015-02-27
2015-03-02
2015-02-27
Culture_End_Date
2015-03-20
2015-03-23
2015-03-20
Passage
4
4
4
QC Stats
Experiment QC
298
298-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
298_01
298_02
298_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
298_01
298_02
298_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
C01
A01
none
inline_barcode_2
D08fixed
B06
none
i5_barcode
504
504
504
i7_barcode
702
702
701
Sequencing Information
Rep_UID
298_01
298_02
298_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/298.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
298
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
298.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
298
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=298)
Back