ENCORE eCLIP:278

PRPF8 eCLIP in K562

Experiment Information (Status: Released)

	278	278-control
Exp_UID	278	278
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR534YOI	ENCSR096SZE
ENCODE_alias	gene-yeo:278	gene-yeo:278-control
RBP	PRPF8	PRPF8
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB207WIC	ENCAB207WIC
Antibody	A303-921A	A303-921A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	32	69

Replicate Information


Rep_UID	278_01	278_02	278_INPUT
Exp UID	278	278	278
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB518XPN	ENCLB195SRU	ENCLB143BKD
ENCODE_alias	gene-yeo:278_01	gene-yeo:278_02	gene-yeo:278_INPUT
Biosample Name	K562_022715	K562_022315	K562_022715
Biosample_ENCODE_Accession	ENCBS253VOZ	ENCBS831COV	ENCBS253VOZ
Biosample_ENCODE_Alias	gene-yeo:K562_022715	gene-yeo:K562_022315	gene-yeo:K562_022715
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-02-27	2015-02-23	2015-02-27
Culture_End_Date	2015-03-23	2015-03-20	2015-03-23
Passage	5	6	5

QC Stats

Experiment QC

	278	278-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	278_01	278_02	278_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	278_01	278_02	278_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A03	none
inline_barcode_2	F05	G07	none
i5_barcode	505	505	505
i7_barcode	702	702	701

Sequencing Information


Rep_UID	278_01	278_02	278_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/278.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	278	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
278.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	278	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=278)