CPSF6      eCLIP in K562

Experiment Information (Status: Released)
258258-control
Exp_UID258258
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR532VUBENCSR249WNK
ENCODE_aliasgene-yeo:258gene-yeo:258-control
RBPCPSF6CPSF6
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB652TTLENCAB652TTL
AntibodyA301-356AA301-356A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID2764




Replicate Information
Rep_UID258_01258_02258_INPUT
Exp UID258258258
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB639LHOENCLB853UAVENCLB998LZP
ENCODE_aliasgene-yeo:258_01gene-yeo:258_02gene-yeo:258_INPUT
Biosample NameK562_022715K562_022315K562_022715
Biosample_ENCODE_AccessionENCBS253VOZENCBS831COVENCBS253VOZ
Biosample_ENCODE_Aliasgene-yeo:K562_022715gene-yeo:K562_022315gene-yeo:K562_022715
Cell_LineK562K562K562
Culture_Start_Date2015-02-272015-02-232015-02-27
Culture_End_Date2015-03-232015-03-202015-03-23
Passage565




QC Stats
Experiment QC
258258-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID258_01258_02258_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID258_01258_02258_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode502502502
i7_barcode702702701




Sequencing Information
Rep_UID258_01258_02258_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/258.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz258final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
258.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz258final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=258)