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SLTM
eCLIP
in K562
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
256
256-control
Exp_UID
256
256
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR000SSH
ENCSR820GBM
ENCODE_alias
gene-yeo:256
gene-yeo:256-control
RBP
SLTM
SLTM
Cell_Line
K562
K562
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB526HXQ
ENCAB526HXQ
Antibody
A302-834A
A302-834A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
26
63
Replicate Information
Rep_UID
256_01
256_02
256_INPUT
Exp UID
256
256
256
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB211JXD
ENCLB313FIH
ENCLB333QAN
ENCODE_alias
gene-yeo:256_01
gene-yeo:256_02
gene-yeo:256_INPUT
Biosample Name
K562_022715
K562_022715
K562_022715
Biosample_ENCODE_Accession
ENCBS253VOZ
ENCBS253VOZ
ENCBS253VOZ
Biosample_ENCODE_Alias
gene-yeo:K562_022715
gene-yeo:K562_022715
gene-yeo:K562_022715
Cell_Line
K562
K562
K562
Culture_Start_Date
2015-02-27
2015-02-27
2015-02-27
Culture_End_Date
2015-03-23
2015-03-23
2015-03-23
Passage
5
5
5
QC Stats
Experiment QC
256
256-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
256_01
256_02
256_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
256_01
256_02
256_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
A01
C01
none
inline_barcode_2
B06
D08fixed
none
i5_barcode
501
501
501
i7_barcode
702
702
703
Sequencing Information
Rep_UID
256_01
256_02
256_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/256.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
256
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
256.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
256
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=256)
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