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HNRNPU
eCLIP
in K562
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
249
249-control
Exp_UID
249
249
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR520BZQ
ENCSR829SLO
ENCODE_alias
gene-yeo:249
gene-yeo:249-control
RBP
HNRNPU
HNRNPU
Cell_Line
K562
K562
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB502MPG
ENCAB502MPG
Antibody
sc32315
sc32315
Lot_num
C3012
C3012
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
25
62
Replicate Information
Rep_UID
249_01
249_02
249_INPUT
Exp UID
249
249
249
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB174IHH
ENCLB935EDZ
ENCLB913WLN
ENCODE_alias
gene-yeo:249_01
gene-yeo:249_02
gene-yeo:249_INPUT
Biosample Name
K562_110314A
K562_110314B
K562_110314A
Biosample_ENCODE_Accession
ENCBS126AJR
ENCBS658KIL
ENCBS126AJR
Biosample_ENCODE_Alias
gene-yeo:K562_110314A
gene-yeo:K562_110314B
gene-yeo:K562_110314A
Cell_Line
K562
K562
K562
Culture_Start_Date
2014-10-03
2014-10-06
2014-10-03
Culture_End_Date
2014-11-03
2014-11-03
2014-11-03
Passage
6
5
6
QC Stats
Experiment QC
249
249-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
249_01
249_02
249_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
249_01
249_02
249_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
A01
C01
none
inline_barcode_2
B06
D08fixed
none
i5_barcode
505
505
505
i7_barcode
704
704
703
Sequencing Information
Rep_UID
249_01
249_02
249_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/249.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
249
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
249.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
249
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=249)
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