XRN2      eCLIP in K562

Experiment Information (Status: Released)
245245-control
Exp_UID245245
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR657TZBENCSR170XQH
ENCODE_aliasgene-yeo:245gene-yeo:245-control
RBPXRN2XRN2
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB995BMTENCAB995BMT
AntibodyA301-103AA301-103A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID2259




Replicate Information
Rep_UID245_01245_02245_INPUT
Exp UID245245245
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB995NJQENCLB763BPIENCLB177FFM
ENCODE_aliasgene-yeo:245_01gene-yeo:245_02gene-yeo:245_INPUT
Biosample NameK562_110714K562_020415K562_110714
Biosample_ENCODE_AccessionENCBS150ILKENCBS445ZHJENCBS150ILK
Biosample_ENCODE_Aliasgene-yeo:K562_110714gene-yeo:K562_020415gene-yeo:K562_110714
Cell_LineK562K562K562
Culture_Start_Date2014-10-032014-01-022014-10-03
Culture_End_Date2014-11-072015-02-042014-11-07
Passage545




QC Stats
Experiment QC
245245-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID245_01245_02245_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID245_01245_02245_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode504504503
i7_barcode701701706




Sequencing Information
Rep_UID245_01245_02245_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/245.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz245final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
245.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz245final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=245)