U2AF1      eCLIP in K562

Experiment Information (Status: Released)
244244-control
Exp_UID244244
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR862QCHENCSR482ZSE
ENCODE_aliasgene-yeo:244gene-yeo:244-control
RBPU2AF1U2AF1
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB298WVVENCAB298WVV
AntibodyA302-079AA302-079A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID2158




Replicate Information
Rep_UID244_01244_02244_INPUT
Exp UID244244244
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB152DBJENCLB160FVXENCLB014GQG
ENCODE_aliasgene-yeo:244_01gene-yeo:244_02gene-yeo:244_INPUT
Biosample NameK562_110314BK562_020415K562_020415
Biosample_ENCODE_AccessionENCBS658KILENCBS445ZHJENCBS445ZHJ
Biosample_ENCODE_Aliasgene-yeo:K562_110314Bgene-yeo:K562_020415gene-yeo:K562_020415
Cell_LineK562K562K562
Culture_Start_Date2014-10-062014-01-022014-01-02
Culture_End_Date2014-11-032015-02-042015-02-04
Passage544




QC Stats
Experiment QC
244244-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID244_01244_02244_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID244_01244_02244_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode502502502
i7_barcode706706705




Sequencing Information
Rep_UID244_01244_02244_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/244.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz244final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
244.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz244final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=244)