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TRA2A
eCLIP
in K562
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
240
240-control
Exp_UID
240
240
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR365NVO
ENCSR619RLC
ENCODE_alias
gene-yeo:240
gene-yeo:240-control
RBP
TRA2A
TRA2A
Cell_Line
K562
K562
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB683DWW
ENCAB683DWW
Antibody
A303-779A
A303-779A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
17
54
Replicate Information
Rep_UID
240_01
240_02
240_INPUT
Exp UID
240
240
240
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB985UUR
ENCLB938TSS
ENCLB547DSI
ENCODE_alias
gene-yeo:240_01
gene-yeo:240_02
gene-yeo:240_INPUT
Biosample Name
K562_020415
K562_110314A
K562_020415
Biosample_ENCODE_Accession
ENCBS445ZHJ
ENCBS126AJR
ENCBS445ZHJ
Biosample_ENCODE_Alias
gene-yeo:K562_020415
gene-yeo:K562_110314A
gene-yeo:K562_020415
Cell_Line
K562
K562
K562
Culture_Start_Date
2014-01-02
2014-10-03
2014-01-02
Culture_End_Date
2015-02-04
2014-11-03
2015-02-04
Passage
4
6
4
QC Stats
Experiment QC
240
240-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
240_01
240_02
240_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
240_01
240_02
240_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
A01
C01
none
inline_barcode_2
B06
D08fixed
none
i5_barcode
502
502
502
i7_barcode
702
702
701
Sequencing Information
Rep_UID
240_01
240_02
240_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/240.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
240
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
240.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
240
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=240)
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