FXR2      eCLIP in K562

Experiment Information (Status: Released)
237237-control
Exp_UID237237
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR224QWCENCSR411IMJ
ENCODE_aliasgene-yeo:237gene-yeo:237-control
RBPFXR2FXR2
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB069PGUENCAB069PGU
AntibodyA303-894AA303-894A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID1653




Replicate Information
Rep_UID237_01237_02237_INPUT
Exp UID237237237
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB208FLOENCLB378ERIENCLB949LUH
ENCODE_aliasgene-yeo:237_01gene-yeo:237_02gene-yeo:237_INPUT
Biosample NameK562_020415K562_110714K562_020415
Biosample_ENCODE_AccessionENCBS445ZHJENCBS150ILKENCBS445ZHJ
Biosample_ENCODE_Aliasgene-yeo:K562_020415gene-yeo:K562_110714gene-yeo:K562_020415
Cell_LineK562K562K562
Culture_Start_Date2014-01-022014-10-032014-01-02
Culture_End_Date2015-02-042014-11-072015-02-04
Passage454




QC Stats
Experiment QC
237237-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID237_01237_02237_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID237_01237_02237_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A03A04none
inline_barcode_2G07F05none
i5_barcode501501502
i7_barcode706706704




Sequencing Information
Rep_UID237_01237_02237_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/237.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz237final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
237.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz237final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=237)