FMR1      eCLIP in K562

Experiment Information (Status: Released)
236236-control
Exp_UID236236
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR331VNXENCSR735MBZ
ENCODE_aliasgene-yeo:236gene-yeo:236-control
RBPFMR1FMR1
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB000BFKENCAB000BFK
AntibodyRN016PRN016P
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID1552




Replicate Information
Rep_UID236_01236_02236_INPUT
Exp UID236236236
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB498TQPENCLB105HGFENCLB146ZUI
ENCODE_aliasgene-yeo:236_01gene-yeo:236_02gene-yeo:236_INPUT
Biosample NameK562_020415K562_110714K562_020415
Biosample_ENCODE_AccessionENCBS445ZHJENCBS150ILKENCBS445ZHJ
Biosample_ENCODE_Aliasgene-yeo:K562_020415gene-yeo:K562_110714gene-yeo:K562_020415
Cell_LineK562K562K562
Culture_Start_Date2014-01-022014-10-032014-01-02
Culture_End_Date2015-02-042014-11-072015-02-04
Passage454




QC Stats
Experiment QC
236236-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID236_01236_02236_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID236_01236_02236_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A03A04none
inline_barcode_2G07F05none
i5_barcode501501503
i7_barcode701701704




Sequencing Information
Rep_UID236_01236_02236_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/236.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz236final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
236.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz236final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=236)