ENCORE eCLIP:235

XRN2 eCLIP in HepG2

Experiment Information (Status: Released)

	235	235-control
Exp_UID	235	235
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR655NZA	ENCSR247PDK
ENCODE_alias	gene-yeo:235	gene-yeo:235-control
RBP	XRN2	XRN2
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB995BMT	ENCAB995BMT
Antibody	A301-103A	A301-103A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	273	303

Replicate Information


Rep_UID	235_01	235_02	235_INPUT
Exp UID	235	235	235
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB807VRW	ENCLB180LHZ	ENCLB950HQF
ENCODE_alias	gene-yeo:235_01	gene-yeo:235_02	gene-yeo:235_INPUT
Biosample Name	HepG2_082214_batchA	HepG2_020315	HepG2_082214_batchA
Biosample_ENCODE_Accession	ENCBS547JWV	ENCBS948WDK	ENCBS547JWV
Biosample_ENCODE_Alias	gene-yeo:HepG2_082214_batchA	gene-yeo:HepG2_020315	gene-yeo:HepG2_082214_batchA
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2014-07-23	2015-01-05	2014-07-23
Culture_End_Date	2014-08-21	2015-02-03	2014-08-21
Passage	4	4	4

QC Stats

Experiment QC

	235	235-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	235_01	235_02	235_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	235_01	235_02	235_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A03	none
inline_barcode_2	F05	G07	none
i5_barcode	503	503	503
i7_barcode	705	705	706

Sequencing Information


Rep_UID	235_01	235_02	235_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/235x4000.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	235	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
235x4000.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	235	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=235)