ENCORE eCLIP:230

BCCIP eCLIP in HepG2

Experiment Information (Status: Released)

	230	230-control
Exp_UID	230	230
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR485QCG	ENCSR655BRZ
ENCODE_alias	gene-yeo:230	gene-yeo:230-control
RBP	BCCIP	BCCIP
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB586MIB	ENCAB586MIB
Antibody	A302-196A	A302-196A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	14	51

Replicate Information


Rep_UID	230_01	230_02	230_INPUT
Exp UID	230	230	230
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB473MOT	ENCLB896QXF	ENCLB822BHO
ENCODE_alias	gene-yeo:230_01	gene-yeo:230_02	gene-yeo:230_INPUT
Biosample Name	HepG2_020315	HepG2_082214_batchB	HepG2_020315
Biosample_ENCODE_Accession	ENCBS948WDK	ENCBS861HMN	ENCBS948WDK
Biosample_ENCODE_Alias	gene-yeo:HepG2_020315	gene-yeo:HepG2_082214_batchB	gene-yeo:HepG2_020315
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-01-05	2014-07-23	2015-01-05
Culture_End_Date	2015-02-03	2014-08-22	2015-02-03
Passage	4	4	4

QC Stats

Experiment QC

	230	230-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	230_01	230_02	230_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	230_01	230_02	230_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A01	C01	none
inline_barcode_2	B06	D08fixed	none
i5_barcode	505	505	505
i7_barcode	703	703	704

Sequencing Information


Rep_UID	230_01	230_02	230_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/230.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	230	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
230.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	230	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=230)