ENCORE eCLIP:228

SF3B4 eCLIP in HepG2

Experiment Information (Status: Released)

	228	228-control
Exp_UID	228	228
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR279UJF	ENCSR886YYD
ENCODE_alias	gene-yeo:228	gene-yeo:228-control
RBP	SF3B4	SF3B4
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB647CFU	ENCAB647CFU
Antibody	A303-950A	A303-950A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	106	130

Replicate Information


Rep_UID	228_01	228_02	228_INPUT
Exp UID	228	228	228
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB509GIL	ENCLB015SHG	ENCLB659MHW
ENCODE_alias	gene-yeo:228_01	gene-yeo:228_02	gene-yeo:228_INPUT
Biosample Name	HepG2_082214_batchB	HepG2_020315	HepG2_082214_batchB
Biosample_ENCODE_Accession	ENCBS861HMN	ENCBS948WDK	ENCBS861HMN
Biosample_ENCODE_Alias	gene-yeo:HepG2_082214_batchB	gene-yeo:HepG2_020315	gene-yeo:HepG2_082214_batchB
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2014-07-23	2015-01-05	2014-07-23
Culture_End_Date	2014-08-22	2015-02-03	2014-08-22
Passage	4	4	4

QC Stats

Experiment QC

	228	228-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	228_01	228_02	228_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	228_01	228_02	228_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A01	C01	none
inline_barcode_2	B06	D08fixed	none
i5_barcode	505	505	505
i7_barcode	701	701	702

Sequencing Information


Rep_UID	228_01	228_02	228_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/228.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	228	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
228.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	228	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=228)