IGF2BP2      eCLIP in K562

Experiment Information (Status: Released)
226226-control
Exp_UID226226
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR062NNBENCSR387RGT
ENCODE_aliasgene-yeo:226gene-yeo:226-control
RBPIGF2BP2IGF2BP2
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB597TIVENCAB597TIV
AntibodyRN008PRN008P
Lot_num22
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID1350




Replicate Information
Rep_UID226_01226_02226_INPUT
Exp UID226226226
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB968PKXENCLB806OUQENCLB246GUQ
ENCODE_aliasgene-yeo:226_01gene-yeo:226_02gene-yeo:226_INPUT
Biosample NameK562_020415K562_110714K562_110714
Biosample_ENCODE_AccessionENCBS445ZHJENCBS150ILKENCBS150ILK
Biosample_ENCODE_Aliasgene-yeo:K562_020415gene-yeo:K562_110714gene-yeo:K562_110714
Cell_LineK562K562K562
Culture_Start_Date2014-01-022014-10-032014-10-03
Culture_End_Date2015-02-042014-11-072014-11-07
Passage455




QC Stats
Experiment QC
226226-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID226_01226_02226_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID226_01226_02226_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1C01A01none
inline_barcode_2D08fixedB06none
i5_barcode504504504
i7_barcode706706705




Sequencing Information
Rep_UID226_01226_02226_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/226.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz226final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
226.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz226final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=226)