ENCORE eCLIP:222

HNRNPM eCLIP in HepG2

Experiment Information (Status: Released)

	222	222-control
Exp_UID	222	222
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR267UCX	ENCSR459ONR
ENCODE_alias	gene-yeo:222	gene-yeo:222-control
RBP	HNRNPM	HNRNPM
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB792TQV	ENCAB792TQV
Antibody	SC-20001	SC-20001
Lot_num	D1304	D1304
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	10	47

Replicate Information


Rep_UID	222_01	222_02	222_INPUT
Exp UID	222	222	222
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB870QHM	ENCLB347LJB	ENCLB651LPO
ENCODE_alias	gene-yeo:222_01	gene-yeo:222_02	gene-yeo:222_INPUT
Biosample Name	HepG2_082214_batchA	HepG2_031414	HepG2_082214_batchA
Biosample_ENCODE_Accession	ENCBS547JWV	ENCBS537ADD	ENCBS547JWV
Biosample_ENCODE_Alias	gene-yeo:HepG2_082214_batchA	gene-yeo:HepG2_031414	gene-yeo:HepG2_082214_batchA
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2014-07-23	2014-02-11	2014-07-23
Culture_End_Date	2014-08-21	2014-03-14	2014-08-21
Passage	4	4	4

QC Stats

Experiment QC

	222	222-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	222_01	222_02	222_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	222_01	222_02	222_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	C01	A01	none
inline_barcode_2	D08fixed	B06	none
i5_barcode	503	503	502
i7_barcode	701	701	701

Sequencing Information


Rep_UID	222_01	222_02	222_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/222.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	222	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
222.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	222	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=222)