IGF2BP1      eCLIP in K562

Experiment Information (Status: Released)
220220-control
Exp_UID220220
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR975KIRENCSR125CLF
ENCODE_aliasgene-yeo:220gene-yeo:220-control
RBPIGF2BP1IGF2BP1
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB108MXAENCAB108MXA
AntibodyRN007PRN007P
Lot_num33
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID946




Replicate Information
Rep_UID220_01220_02220_INPUT
Exp UID220220220
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB089DKQENCLB795NJIENCLB947OFZ
ENCODE_aliasgene-yeo:220_01gene-yeo:220_02gene-yeo:220_INPUT
Biosample NameK562_020415K562_110714K562_020415
Biosample_ENCODE_AccessionENCBS445ZHJENCBS150ILKENCBS445ZHJ
Biosample_ENCODE_Aliasgene-yeo:K562_020415gene-yeo:K562_110714gene-yeo:K562_020415
Cell_LineK562K562K562
Culture_Start_Date2014-01-022014-10-032014-01-02
Culture_End_Date2015-02-042014-11-072015-02-04
Passage454




QC Stats
Experiment QC
220220-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID220_01220_02220_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID220_01220_02220_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode505505506
i7_barcode701701702




Sequencing Information
Rep_UID220_01220_02220_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/220.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz220final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
220.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz220final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=220)