ENCORE eCLIP:206

HNRNPK eCLIP in HepG2

Experiment Information (Status: Released)

	206	206-control
Exp_UID	206	206
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR828ZID	ENCSR354KAS
ENCODE_alias	gene-yeo:206	gene-yeo:206-control
RBP	HNRNPK	HNRNPK
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB000BFN	ENCAB000BFN
Antibody	RN019P	RN019P
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	4	41

Replicate Information


Rep_UID	206_01	206_02	206_INPUT
Exp UID	206	206	206
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB335FPG	ENCLB276ADD	ENCLB068HLW
ENCODE_alias	gene-yeo:206_01	gene-yeo:206_02	gene-yeo:206_INPUT
Biosample Name	HepG2_082214_batchA	HepG2_082214_batchB	HepG2_082214_batchA
Biosample_ENCODE_Accession	ENCBS547JWV	ENCBS861HMN	ENCBS547JWV
Biosample_ENCODE_Alias	gene-yeo:HepG2_082214_batchA	gene-yeo:HepG2_082214_batchB	gene-yeo:HepG2_082214_batchA
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2014-07-23	2014-07-23	2014-07-23
Culture_End_Date	2014-08-21	2014-08-22	2014-08-21
Passage	4	4	4

QC Stats

Experiment QC

	206	206-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	206_01	206_02	206_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	206_01	206_02	206_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A01	A01	none
inline_barcode_2	B06	B06	none
i5_barcode	503	503	504
i7_barcode	701	706	701

Sequencing Information


Rep_UID	206_01	206_02	206_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/206.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	206	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
206.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	206	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=206)