ENCORE eCLIP:203

HNRNPC eCLIP in HepG2

Experiment Information (Status: Released)

	203	203-control
Exp_UID	203	203
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR550DVK	ENCSR497ANA
ENCODE_alias	gene-yeo:203	gene-yeo:203-control
RBP	HNRNPC	HNRNPC
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB275OHR	ENCAB275OHR
Antibody	RN052PW	RN052PW
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	1	38

Replicate Information


Rep_UID	271_01	203_02	271_INPUT
Exp UID	203	203	203
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB094PVE	ENCLB392RHM	ENCLB104YKZ
ENCODE_alias	gene-yeo:271_01	gene-yeo:203_02	gene-yeo:271_INPUT
Biosample Name	HepG2_032015	HepG2_031414	HepG2_032015
Biosample_ENCODE_Accession	ENCBS548DJV	ENCBS537ADD	ENCBS548DJV
Biosample_ENCODE_Alias	gene-yeo:HepG2_032015	gene-yeo:HepG2_031414	gene-yeo:HepG2_032015
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-02-27	2014-02-11	2015-02-27
Culture_End_Date	2015-03-20	2014-03-14	2015-03-20
Passage	4	4	4

QC Stats

Experiment QC

	203	203-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	271_01	203_02	271_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	271_01	203_02	271_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A01	none
inline_barcode_2	F05	B06	none
i5_barcode	504	502	504
i7_barcode	702	701	701

Sequencing Information


Rep_UID	271_01	203_02	271_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/203.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	203	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
203.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	203	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=203)