WARS-BGKcLV44-83_S37_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set75/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3315 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BGKcLV44-1_S1_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV44-2_S2_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 30974 |
WARS-BGKcLV44-83_S37_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set75/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3315 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BGKcLV44-1_S1_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV44-2_S2_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 31016 |
WARS-BGKcLV44-83_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set75/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 3315 | | | | | GRCh38 | V40 | WARS-BGKcLV44-83_S37_L001_R1_001.filtered.trimmed.paired.fastq.gz,WARS-BGKcLV44-83_S37_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 31058 |
WARS-BGKcLV44-83_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set75/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3315 | | | | | GRCh38 | V40 | WARS-BGKcLV44-83_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 31100 |
WARS-BGKcLV44-83_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set75/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3315 | | | | | GRCh38 | V40 | WARS-BGKcLV44-83_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 31142 |
WARS-BGKcLV44-83_Signal.Unique.strand-.bw | ENCODE_DATA/set75/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3315 | | | | | GRCh38 | V40 | WARS-BGKcLV44-83_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 31184 |
WARS-BGKcLV44-83_Signal.Unique.strand+.bw | ENCODE_DATA/set75/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3315 | | | | | GRCh38 | V40 | WARS-BGKcLV44-83_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 31226 |
WARS-BGKcLV44-83_quant.sf | ENCODE_DATA/set75/salmon_ENCORE2_file_links | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 3315 | | | | | GRCh38 | V40 | WARS-BGKcLV44-83_S37_L001_R1_001.filtered.trimmed.paired.fastq.gz,WARS-BGKcLV44-83_S37_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 31268 |
WARS-BGKcLV44-84_S38_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set75/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3316 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BGKcLV44-1_S1_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV44-2_S2_L001_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 30975 |
WARS-BGKcLV44-84_S38_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set75/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3316 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BGKcLV44-1_S1_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV44-2_S2_L001_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 31017 |
WARS-BGKcLV44-84_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set75/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 3316 | | | | | GRCh38 | V40 | WARS-BGKcLV44-84_S38_L001_R1_001.filtered.trimmed.paired.fastq.gz,WARS-BGKcLV44-84_S38_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 31059 |
WARS-BGKcLV44-84_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set75/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3316 | | | | | GRCh38 | V40 | WARS-BGKcLV44-84_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 31101 |
WARS-BGKcLV44-84_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set75/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3316 | | | | | GRCh38 | V40 | WARS-BGKcLV44-84_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 31143 |
WARS-BGKcLV44-84_Signal.Unique.strand-.bw | ENCODE_DATA/set75/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3316 | | | | | GRCh38 | V40 | WARS-BGKcLV44-84_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 31185 |
WARS-BGKcLV44-84_Signal.Unique.strand+.bw | ENCODE_DATA/set75/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3316 | | | | | GRCh38 | V40 | WARS-BGKcLV44-84_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 31227 |
WARS-BGKcLV44-84_quant.sf | ENCODE_DATA/set75/salmon_ENCORE2_file_links | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 3316 | | | | | GRCh38 | V40 | WARS-BGKcLV44-84_S38_L001_R1_001.filtered.trimmed.paired.fastq.gz,WARS-BGKcLV44-84_S38_L001_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 31269 |