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SYNCRIP
CRISPR
in HepG2
Batch: BGHcLV47
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BGHcLV47-79
BGHcLV47-80
idx
0
0
TRCN#_or_BGC#
BGC#0000104
BGC#0000104
shRNA_or_gRNA_sequence
GTGGAGTCATGAAGACTTAC
GTGGAGTCATGAAGACTTAC
PAM
AGG
AGG
Name
SYNCRIP-73-1
SYNCRIP-73-1
Sample_ID
BGHcLV47-79
BGHcLV47-80
transduction_Date
1/28/25
1/28/25
days
D6
D6
RBP_name
SYNCRIP
SYNCRIP
qPCR_result
Ave_qPCR
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
4616
5228
WB_result
77.2
77.6
Ave_WB
WB_DONE_date
2/6/25
MW
70kD
IP
fu's
antibody_Cat#
RN046PW
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
9866
9867
Western Blot
Western Blot info was not avaliable
Experiment Status
BGHcLV47-79
BGHcLV47-80
Sample_ID
BGHcLV47-79
BGHcLV47-80
Sample Name
Sample Name
SYNCRIP-BGHcLV47-79
SYNCRIP-BGHcLV47-80
RBP
SYNCRIP
SYNCRIP
Cell_Line
HepG2
HepG2
Exp UID
Status
Sequenced
Sequenced
Status_date
2025-05-14
2025-05-14
Project
ENCORE2
ENCORE2
Note
ID
14176
14177
Library-Prep
Sequencing
Library-Prep Information
BGHcLV47-79
BGHcLV47-80
Sample #
29
30
Sample Name
SYNCRIP-BGHcLV47-79
SYNCRIP-BGHcLV47-80
Sample_Name_Alias
Index Well Position
E11
F11
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2025-04-23
2025-04-23
Lib_ID
Lib-250423
Lib-250423
Tecan_Location
Tecan
Tecan_date
Size_bp
273
268
Peak_Molarity
92.40
85.20
libSampleQC_DNA_Well
RIN
libSample_RNA_Well
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2025-04-22
2025-04-22
Sample_ID
BGHcLV47-79
BGHcLV47-80
RBP
SYNCRIP
SYNCRIP
Batch_ID
BGHcLV47
BGHcLV47
WB_result
77.200
77.600
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4740
4741
Sequencing Information
BGHcLV47-79
BGHcLV47-80
Sample_ID
BGHcLV47-79
BGHcLV47-80
Sample Name
SYNCRIP-BGHcLV47-79
SYNCRIP-BGHcLV47-80
Pool ID
Pool-250422
Pool-250422
LocalServer_folder
total_reads
0
0
total_aligned_reads
0
0
unique_aligned_reads
0
0
percent_uniqueAligned
correlation_replicates
spikein_reads
0
0
percent_spikeins
original_ReadLength
QC_Status
ReadyToQC
ReadyToQC
ID
3443
3444
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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