LINC00843

General Information

Gene Name       : LINC00843
Gene ID             : ENSG00000178440.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LINC00843)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LINC00843ENSG00000178440.50.000.040.02ENCSR000AEF
HepG2LINC00843ENSG00000178440.50.140.190.17ENCSR985KAT
K562LINC00843ENSG00000178440.50.300.000.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LINC00843 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LINC00843 RNA is bound by 3 proteins.  







eCLIP assay for LINC00843 is not avaliable on ENCORE database.





3 proteins are bound to LINC00843 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr105173863751738716+intron-Distal4.067788.76214K562EIF4G2
chr105173933251739446+intron-Distal6.9543120.42309K562EIF4G2
chr105173534051735402+intron-Distal4.474575.97091K562TARDBP
chr105173936551739445+intron-Distal4.4749510.08273K562TARDBP
chr105173348451733536+intron-Distal3.721095.73001K562TARDBP
chr105173281251732903+intron-Proximal4.156489.08333HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LINC00843 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LINC00843 is not available on ENCORE database.

  • No RBPs affect the gene expression of LINC00843 on ENCORE database.


The Knockdown/knockout RNA-Seq assay for LINC00843 is not available on ENCORE database.






No RBPs affect the gene expression of LINC00843 on ENCORE database.






The Knockdown/knockout RNA-Seq assay for LINC00843 is not available on ENCORE database.






No RBPs affect the alternative splcing events of LINC00843 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for LINC00843 is not avaliable on ENCORE database.