CACYBP

General Information

Gene Name : CACYBP
Gene ID : ENSG00000116161.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CACYBP)

Not Available

Antibody Validation

View validation images for all CACYBP antibodies

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CACYBP	ENSG00000116161.17	75.73	149.52	112.62	ENCSR000AEF
HepG2	CACYBP	ENSG00000116161.17	127.90	126.31	127.11	ENCSR985KAT
K562	CACYBP	ENSG00000116161.17	328.77	347.75	338.26	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
CACYBP	ENCAB252NRR	A302-904A	1			Released, ENCODE4
CACYBP	ENCAB194AJN	A302-905A	1			Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
CACYBP	K562	CRISPR	BGKcLV26-49,BGKcLV26-50	BGKcLV26-1,BGKcLV26-2	35.0,44.6	NotSatisfied	ENCODE4
CACYBP	K562	CRISPR	BGKcLV35-7,BGKcLV35-8	BGKcLV35-1,BGKcLV35-2	0.0,0.0	NotSatisfied	ENCORE2
CACYBP	K562	CRISPR	BGKcLV48-13,BGKcLV48-14	BGKcLV48-1,BGKcLV48-2	0.0,0.0	Experimented	ENCORE2
CACYBP	K562	CRISPR	BGKcLV48-15,BGKcLV48-16	BGKcLV48-1,BGKcLV48-2	0.0,0.0	Experimented	ENCORE2
CACYBP	HepG2	CRISPR	BGHcLV27-49,BGHcLV27-50	BGHcLV27-1,BGHcLV27-2	8.4,16.9	NotSatisfied	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
CACYBP	Product_ID: A302-904A Lot_ID: 1 Source: Bethyl Labs Target Name: CACYBP-human
CACYBP	Product_ID: A302-905A Lot_ID: 1 Source: Bethyl Labs Target Name: CACYBP-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CACYBP is not avaliable on ENCORE database.

Proteins bound to RNA

CACYBP RNA is bound by 17 proteins.

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eCLIP assay for CACYBP is not avaliable on ENCORE database.

17 proteins are bound to CACYBP RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	174969232	174969332	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.27796	73.07515	K562	DDX3X
chr1	174969137	174969232	+	5'-UTR,intron-Distal,intron-Proximal	4.57276	42.70014	K562	DDX3X
chr1	174977755	174977844	+	CDS,intron-Proximal	3.41409	21.88864	K562	UCHL5
chr1	174979208	174979261	+	3'-UTR,CDS	4.54342	16.15279	HepG2	SUB1
chr1	174973760	174973833	+	5'-UTR,CDS	3.14291	15.44276	K562	DDX3X
chr1	174979419	174979477	+	3'-UTR	6.21509	11.71673	HepG2	SUB1
chr1	174973749	174973760	+	5'-UTR,CDS,intron-Proximal	3.78294	10.19291	K562	DDX3X
chr1	174979597	174979710	+	3'-UTR	3.28778	9.95798	K562	UPF1
chr1	174977763	174977843	+	CDS,intron-Proximal	3.19814	8.99559	K562	GRWD1
chr1	174976186	174976264	+	CDS,intron-Proximal	5.53220	8.93732	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 34 entries

eCLIP assay for CACYBP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CACYBP is not available on ENCORE database.
132 RBPs can affect the levels of CACYBP.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CACYBP is not available on ENCORE database.

132 RBPs can affect the gene expression of CACYBP :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CACYBP	ENSG00000116161.13	312.73750	1740.87940	-2.47680	91.60170	89.43820	HepG2	RBM22
CACYBP	ENSG00000116161.13	666.31990	1961.98490	-1.55800	36.54050	34.66030	HepG2	HNRNPLL
CACYBP	ENSG00000116161.13	2949.20810	5663.26300	-0.94130	27.61900	25.12170	K562	CPSF6
CACYBP	ENSG00000116161.13	867.96800	1975.54090	-1.18650	26.00060	24.47280	HepG2	BOP1
CACYBP	ENSG00000116161.13	5184.65720	3058.41140	0.76140	25.67340	23.94430	K562	FXR1
CACYBP	ENSG00000116161.13	1038.67730	2042.71350	-0.97570	26.02330	23.87750	HepG2	NOL12
CACYBP	ENSG00000116161.13	2894.76130	5407.06020	-0.90140	21.19130	18.85560	K562	GPKOW
CACYBP	ENSG00000116161.13	1199.33170	1869.56830	-0.64050	17.71060	16.22400	HepG2	SLBP
CACYBP	ENSG00000116161.13	928.52040	1572.37250	-0.75990	17.43490	15.83470	HepG2	HNRNPF
CACYBP	ENSG00000116161.13	916.95720	1544.76530	-0.75250	17.19940	15.72790	HepG2	SRSF7
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 167 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CACYBP is not available on ENCORE database.

7 RBPs can affect the splicing of CACYBP :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CACYBP	ENSG00000116161.13	chr1	+	174969224	174969331			174968570	174968825	174973749	174973886	-0.14000	0.00000	0.00040	excluded	HepG2	LARP4
SE	CACYBP	ENSG00000116161.13	chr1	+	174969224	174969331			174968570	174968825	174973749	174973886	-0.16600	0.00000	0.00004	excluded	K562	HNRNPC
A3SS	CACYBP	ENSG00000116161.13	chr1	+	174979006	174979215			174979058	174979215	174977744	174977842	0.05300	0.00000	0.00000	longer	K562	AQR
SE	CACYBP	ENSG00000116161.13	chr1	+	174969224	174969331			174968570	174968825	174973749	174973886	0.11400	0.00001	0.00082	included	K562	FXR1
SE	CACYBP	ENSG00000116161.13	chr1	+	174969224	174969331			174968570	174968825	174973749	174973886	-0.15100	0.00005	0.06259	excluded	HepG2	IGF2BP1
SE	CACYBP	ENSG00000116161.13	chr1	+	174969224	174969331			174968570	174968825	174973749	174973960	-0.09800	0.00036	0.00513	excluded	K562	AQR
SE	CACYBP	ENSG00000116161.13	chr1	+	174969224	174969331			174968570	174968825	174973749	174973806	0.06900	0.00042	0.07930	included	K562	METAP2
SE	CACYBP	ENSG00000116161.13	chr1	+	174969224	174969331			174968570	174968825	174973749	174973960	0.07100	0.00267	0.04598	included	K562	SRSF1
MXE	CACYBP	ENSG00000116161.13	chr1	+	174973749	174973969	174975880	174975977	174968299	174968825	174976233	174976333	0.05200	0.00285	0.02244	1included	K562	AQR

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CACYBP

General Information

Functions

Localization

Domains (AlphaFold: CACYBP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CACYBP is not avaliable on ENCORE database.

17 proteins are bound to CACYBP RNA:

eCLIP assay for CACYBP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CACYBP is not available on ENCORE database.

132 RBPs can affect the gene expression of CACYBP :

The Knockdown/knockout RNA-Seq assay for CACYBP is not available on ENCORE database.

7 RBPs can affect the splicing of CACYBP :

The Knockdown/knockout RNA-Seq assay for CACYBP is not avaliable on ENCORE database.