Experiment Information (Status: Released)

RBP	SF1
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	97

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
SF1-1300	RBNS	20-20	1300	SF1_1300.fastq.gz
SF1-20	RBNS	20-20	20	SF1_20.fastq.gz
SF1-320	RBNS	20-20	320	SF1_320.fastq.gz
SF1-5	RBNS	20-20	5	SF1_5.fastq.gz
SF1-80	RBNS	20-20	80	SF1_80.fastq.gz
SF1-input	CN	20-20	0	SF1_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:SF1	ENCSR318HZC	experiment	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-12	ENCODE3			8110
chris-burge:SF1_HNRNPL-input-cntl	ENCSR307EIC	experiment	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-12	ENCODE3			8111
chris-burge:lib-SF1_HNRNPL-input-cntl	ENCLB526ZPX	library	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-12	ENCODE3			8520
chris-burge:lib-SF1-1	ENCLB036GAQ	library	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-12	ENCODE3			8521
chris-burge:lib-SF1-2	ENCLB595HTS	library	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-12	ENCODE3			8522
chris-burge:lib-SF1-3	ENCLB172ZVQ	library	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-12	ENCODE3			8523
chris-burge:lib-SF1-4	ENCLB770OMW	library	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-12	ENCODE3			8524
chris-burge:lib-SF1-5	ENCLB341YHM	library	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-12	ENCODE3			8525
chris-burge:SF1_1300.fastq.gz	ENCFF550BZS	file_fastq	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			8921
chris-burge:SF1_20.fastq.gz	ENCFF894RNB	file_fastq	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			8922
chris-burge:SF1_320.fastq.gz	ENCFF574ATK	file_fastq	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			8923
chris-burge:SF1_5.fastq.gz	ENCFF310EFE	file_fastq	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			8924
chris-burge:SF1_80.fastq.gz	ENCFF620JEI	file_fastq	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			8925
chris-burge:SF1_input.fastq.gz	ENCFF395BBW	file_fastq	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			8926
chris-burge:SF1_enrichment_R.4mers.txt	ENCFF045VHV	file_enrichment	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			9437
chris-burge:SF1_enrichment_R.5mers.txt	ENCFF846RCG	file_enrichment	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			9438
chris-burge:SF1_enrichment_R.6mers.txt	ENCFF408CLJ	file_enrichment	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			9439
chris-burge:SF1_enrichment_R.7mers.txt	ENCFF753JLV	file_enrichment	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			9440
chris-burge:SF1_est_binding_frac.4mers.txt	ENCFF580RLC	file_library-fraction	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			9441
chris-burge:SF1_est_binding_frac.5mers.txt	ENCFF990CLK	file_library-fraction	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			9442
chris-burge:SF1_est_binding_frac.6mers.txt	ENCFF514OMP	file_library-fraction	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			9443
chris-burge:SF1_est_binding_frac.7mers.txt	ENCFF268MJA	file_library-fraction	RNA Bind-n-Seq	SF1		Yes	Released	2022-07-14	ENCODE3			9444

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
SF1.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
SF1_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SF1_input.fastq.gz	ENCODE3
SF1_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SF1_input.fastq.gz	ENCODE3
SF1_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SF1_input.fastq.gz	ENCODE3
SF1_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SF1_input.fastq.gz	ENCODE3
SF1_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SF1_input.fastq.gz	ENCODE3
SF1_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
SF1_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SF1_1300.fastq.gz,SF1_20.fastq.gz,SF1_320.fastq.gz,SF1_5.fastq.gz,SF1_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
SF1_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SF1_1300.fastq.gz,SF1_20.fastq.gz,SF1_320.fastq.gz,SF1_5.fastq.gz,SF1_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
SF1_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SF1_1300.fastq.gz,SF1_20.fastq.gz,SF1_320.fastq.gz,SF1_5.fastq.gz,SF1_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
SF1_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SF1_1300.fastq.gz,SF1_20.fastq.gz,SF1_320.fastq.gz,SF1_5.fastq.gz,SF1_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
SF1_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SF1_1300.fastq.gz,SF1_20.fastq.gz,SF1_320.fastq.gz,SF1_5.fastq.gz,SF1_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
SF1_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SF1_1300.fastq.gz,SF1_20.fastq.gz,SF1_320.fastq.gz,SF1_5.fastq.gz,SF1_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
SF1_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SF1_1300.fastq.gz,SF1_20.fastq.gz,SF1_320.fastq.gz,SF1_5.fastq.gz,SF1_80.fastq.gz,SF1_input.fastq.gz		ENCODE3
SF1_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SF1_1300.fastq.gz,SF1_20.fastq.gz,SF1_320.fastq.gz,SF1_5.fastq.gz,SF1_80.fastq.gz,SF1_input.fastq.gz		ENCODE3