Experiment Information (Status: Released)

RBP	FUS
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	81

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
FUS-mockPD	CN	20-20	0	FUS_0.fastq.gz
FUS-1300	RBNS	20-20	1300	FUS_1300.fastq.gz
FUS-20	RBNS	20-20	20	FUS_20.fastq.gz
FUS-320	RBNS	20-20	320	FUS_320.fastq.gz
FUS-5	RBNS	20-20	5	FUS_5.fastq.gz
FUS-80	RBNS	20-20	80	FUS_80.fastq.gz
FUS-input	CN	20-20	0	FUS_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:FUS	ENCSR936LOF	experiment	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-12	ENCODE3			8016
chris-burge:FUS-input-cntl	ENCSR653UTE	experiment	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-12	ENCODE3			8017
chris-burge:FUS-mockPD-cntl	ENCSR881AMH	experiment	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-12	ENCODE3			8018
chris-burge:lib-FUS-1	ENCLB329HBR	library	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-12	ENCODE3			8228
chris-burge:lib-FUS-2	ENCLB023NTG	library	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-12	ENCODE3			8229
chris-burge:lib-FUS-3	ENCLB994GBS	library	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-12	ENCODE3			8230
chris-burge:lib-FUS-4	ENCLB531EKD	library	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-12	ENCODE3			8231
chris-burge:lib-FUS-5	ENCLB613NPO	library	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-12	ENCODE3			8232
chris-burge:lib-FUS-input-cntl	ENCLB708ZJS	library	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-12	ENCODE3			8233
chris-burge:lib-FUS-mockPD-cntl	ENCLB409DDN	library	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-12	ENCODE3			8234
chris-burge:FUS_0.fastq.gz	ENCFF441MLG	file_fastq	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			8695
chris-burge:FUS_1300.fastq.gz	ENCFF692LOC	file_fastq	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			8696
chris-burge:FUS_20.fastq.gz	ENCFF375AIG	file_fastq	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			8697
chris-burge:FUS_320.fastq.gz	ENCFF739HXK	file_fastq	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			8698
chris-burge:FUS_5.fastq.gz	ENCFF448YEM	file_fastq	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			8699
chris-burge:FUS_80.fastq.gz	ENCFF680AGJ	file_fastq	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			8700
chris-burge:FUS_enrichment_R.4mers.txt	ENCFF293XMV	file_enrichment	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			9110
chris-burge:FUS_enrichment_R.5mers.txt	ENCFF835DNX	file_enrichment	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			9111
chris-burge:FUS_enrichment_R.6mers.txt	ENCFF409RJT	file_enrichment	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			9112
chris-burge:FUS_est_binding_frac.4mers.txt	ENCFF456TPW	file_library-fraction	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			9113
chris-burge:FUS_est_binding_frac.5mers.txt	ENCFF471JZK	file_library-fraction	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			9114
chris-burge:FUS_est_binding_frac.6mers.txt	ENCFF745URC	file_library-fraction	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			9115
chris-burge:HepG2.with_motif.FUS.bed.gz	ENCFF031YEF	file_bed	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			9718
chris-burge:K562.with_motif.FUS.bed.gz	ENCFF907TLO	file_bed	RNA Bind-n-Seq	FUS		Yes	Released	2022-07-14	ENCODE3			9719

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
FUS.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
FUS_0.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
FUS_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUS_0.fastq.gz,PUF60_input.fastq.gz	ENCODE3
FUS_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUS_0.fastq.gz,PUF60_input.fastq.gz	ENCODE3
FUS_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUS_0.fastq.gz,PUF60_input.fastq.gz	ENCODE3
FUS_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUS_0.fastq.gz,PUF60_input.fastq.gz	ENCODE3
FUS_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUS_0.fastq.gz,PUF60_input.fastq.gz	ENCODE3
FUS_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
FUS_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUS_0.fastq.gz,FUS_1300.fastq.gz,FUS_20.fastq.gz,FUS_320.fastq.gz,FUS_5.fastq.gz,FUS_80.fastq.gz,PUF60_input.fastq.gz		ENCODE3
FUS_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUS_0.fastq.gz,FUS_1300.fastq.gz,FUS_20.fastq.gz,FUS_320.fastq.gz,FUS_5.fastq.gz,FUS_80.fastq.gz,PUF60_input.fastq.gz		ENCODE3
FUS_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUS_0.fastq.gz,FUS_1300.fastq.gz,FUS_20.fastq.gz,FUS_320.fastq.gz,FUS_5.fastq.gz,FUS_80.fastq.gz,PUF60_input.fastq.gz		ENCODE3
FUS_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUS_0.fastq.gz,FUS_1300.fastq.gz,FUS_20.fastq.gz,FUS_320.fastq.gz,FUS_5.fastq.gz,FUS_80.fastq.gz,PUF60_input.fastq.gz		ENCODE3
FUS_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUS_0.fastq.gz,FUS_1300.fastq.gz,FUS_20.fastq.gz,FUS_320.fastq.gz,FUS_5.fastq.gz,FUS_80.fastq.gz,PUF60_input.fastq.gz		ENCODE3
FUS_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUS_0.fastq.gz,FUS_1300.fastq.gz,FUS_20.fastq.gz,FUS_320.fastq.gz,FUS_5.fastq.gz,FUS_80.fastq.gz,PUF60_input.fastq.gz		ENCODE3
HepG2.with_motif.FUS.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	FUS_enrichment_R.5mers.txt,694.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
K562.with_motif.FUS.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	FUS_enrichment_R.5mers.txt,689.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3