Experiment Information (Status: Released)

RBP	A1CF
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	86

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
A1CF-1300	RBNS	20-20	1300	A1CF_1300.fastq.gz
A1CF-20	RBNS	20-20	20	A1CF_20.fastq.gz
A1CF-320	RBNS	20-20	320	A1CF_320.fastq.gz
A1CF-5	RBNS	20-20	5	A1CF_5.fastq.gz
A1CF-80	RBNS	20-20	80	A1CF_80.fastq.gz
A1CF-input	CN	20-20	0	A1CF_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:A1CF	ENCSR934TDK	experiment	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-12	ENCODE3			7988
chris-burge:A1CF_ZFP36-input-cntl	ENCSR866URJ	experiment	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-12	ENCODE3			7989
chris-burge:lib-A1CF-1	ENCLB602XET	library	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-12	ENCODE3			8147
chris-burge:lib-A1CF-2	ENCLB362JSN	library	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-12	ENCODE3			8148
chris-burge:lib-A1CF-3	ENCLB857MID	library	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-12	ENCODE3			8149
chris-burge:lib-A1CF-4	ENCLB950XEN	library	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-12	ENCODE3			8150
chris-burge:lib-A1CF-5	ENCLB206KCX	library	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-12	ENCODE3			8151
chris-burge:lib-A1CF-input-cntl	ENCLB679JDD	library	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-12	ENCODE3			8152
chris-burge:A1CF_1300.fastq.gz	ENCFF305UGG	file_fastq	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			8629
chris-burge:A1CF_20.fastq.gz	ENCFF187MDO	file_fastq	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			8630
chris-burge:A1CF_320.fastq.gz	ENCFF274IJN	file_fastq	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			8631
chris-burge:A1CF_5.fastq.gz	ENCFF194FOG	file_fastq	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			8632
chris-burge:A1CF_80.fastq.gz	ENCFF884QIH	file_fastq	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			8633
chris-burge:A1CF_input.fastq.gz	ENCFF689ELM	file_fastq	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			8634
chris-burge:A1CF_enrichment_R.4mers.txt	ENCFF672ZPY	file_enrichment	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			9015
chris-burge:A1CF_enrichment_R.5mers.txt	ENCFF943MNY	file_enrichment	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			9016
chris-burge:A1CF_enrichment_R.6mers.txt	ENCFF921OBL	file_enrichment	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			9017
chris-burge:A1CF_enrichment_R.7mers.txt	ENCFF902SNR	file_enrichment	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			9018
chris-burge:A1CF_est_binding_frac.4mers.txt	ENCFF630YWR	file_library-fraction	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			9019
chris-burge:A1CF_est_binding_frac.5mers.txt	ENCFF017ISP	file_library-fraction	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			9020
chris-burge:A1CF_est_binding_frac.6mers.txt	ENCFF107SCR	file_library-fraction	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			9021
chris-burge:A1CF_est_binding_frac.7mers.txt	ENCFF708DPS	file_library-fraction	RNA Bind-n-Seq	A1CF		Yes	Released	2022-07-14	ENCODE3			9022

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
A1CF.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
A1CF_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		A1CF_input.fastq.gz	ENCODE3
A1CF_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		A1CF_input.fastq.gz	ENCODE3
A1CF_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		A1CF_input.fastq.gz	ENCODE3
A1CF_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		A1CF_input.fastq.gz	ENCODE3
A1CF_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		A1CF_input.fastq.gz	ENCODE3
A1CF_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
A1CF_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	A1CF_1300.fastq.gz,A1CF_20.fastq.gz,A1CF_320.fastq.gz,A1CF_5.fastq.gz,A1CF_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
A1CF_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	A1CF_1300.fastq.gz,A1CF_20.fastq.gz,A1CF_320.fastq.gz,A1CF_5.fastq.gz,A1CF_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
A1CF_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	A1CF_1300.fastq.gz,A1CF_20.fastq.gz,A1CF_320.fastq.gz,A1CF_5.fastq.gz,A1CF_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
A1CF_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	A1CF_1300.fastq.gz,A1CF_20.fastq.gz,A1CF_320.fastq.gz,A1CF_5.fastq.gz,A1CF_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
A1CF_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	A1CF_1300.fastq.gz,A1CF_20.fastq.gz,A1CF_320.fastq.gz,A1CF_5.fastq.gz,A1CF_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
A1CF_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	A1CF_1300.fastq.gz,A1CF_20.fastq.gz,A1CF_320.fastq.gz,A1CF_5.fastq.gz,A1CF_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
A1CF_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	A1CF_1300.fastq.gz,A1CF_20.fastq.gz,A1CF_320.fastq.gz,A1CF_5.fastq.gz,A1CF_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3
A1CF_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	A1CF_1300.fastq.gz,A1CF_20.fastq.gz,A1CF_320.fastq.gz,A1CF_5.fastq.gz,A1CF_80.fastq.gz,A1CF_input.fastq.gz		ENCODE3