ENCORE eCLIP:682

DHX30 eCLIP in K562

Experiment Information (Status: Released)

	682	682-control
Exp_UID	682	682
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR529GSJ	ENCSR224SND
ENCODE_alias	gene-yeo:682	gene-yeo:682-control
RBP	DHX30	DHX30
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB596PUY	ENCAB596PUY
Antibody	A302-218A	A302-218A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	351	374

Replicate Information


Rep_UID	679_01	679_02	679_INPUT
Exp UID	682	682	682
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION			ENCLB705FGH
ENCODE_alias	gene-yeo:679_01	gene-yeo:679_02	gene-yeo:679_INPUT
Biosample Name	HepG2_061215	HepG2_091615	HepG2_061215
Biosample_ENCODE_Accession	ENCBS308ZPA	ENCBS621TAB	ENCBS308ZPA
Biosample_ENCODE_Alias	gene-yeo:HepG2_061215	gene-yeo:HepG2_091615	gene-yeo:HepG2_061215
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-06-12	2015-09-16	2015-06-12
Culture_End_Date	2015-06-30	2015-10-09	2015-06-30
Passage	3	3	3

QC Stats

Experiment QC

	682	682-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	679_01	679_02	679_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	679_01	679_02	679_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	X1A	X2A	none
inline_barcode_2	X1B	X2B	none
i5_barcode	505	505	506
i7_barcode	705	705	706

Sequencing Information


Rep_UID	679_01	679_02	679_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/682.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	682	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
682.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	682	final_peaks	peaks	eCLIP	hg19

Data Submission Information

Files

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	Status	Project
gene-yeo:4146_CLIP1_rep1.vs.4146_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF012MMQ	file_finalPeaks	eCLIP	4146	Released	ENCODE4
gene-yeo:4058_CLIP1_rep1.vs.4058_CLIP2_rep2.sorted.nh.bb	ENCFF851NFR	file_finalPeaks_bb	eCLIP	4146	Released	ENCODE4
gene-yeo:4139_CLIP1_rep1.vs.4139_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF605AFN	file_finalPeaks	eCLIP	4139	Released	ENCODE4
gene-yeo:4081_CLIP1_rep1.vs.4081_CLIP2_rep2.sorted.nh.bb	ENCFF609EMT	file_finalPeaks_bb	eCLIP	4139	Released	ENCODE4