ENCORE eCLIP:677

GEMIN5 eCLIP in K562

Experiment Information (Status: Released)

	677	677-control
Exp_UID	677	677
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR238CLX	ENCSR347MVO
ENCODE_alias	gene-yeo:677	gene-yeo:677-control
RBP	GEMIN5	GEMIN5
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB395KQN	ENCAB395KQN
Antibody	A301-325A	A301-325A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	348	371

Replicate Information


Rep_UID	676_01	676_02	676_INPUT
Exp UID	677	677	677
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB800QNO	ENCLB554XAY	ENCLB640UDS
ENCODE_alias	gene-yeo:676_01	gene-yeo:676_02	gene-yeo:676_INPUT
Biosample Name	K562_081815	K562_091615	K562_081815
Biosample_ENCODE_Accession	ENCBS175JIH	ENCBS505ILK	ENCBS175JIH
Biosample_ENCODE_Alias	gene-yeo:K562_081815	gene-yeo:K562_091615	gene-yeo:K562_081815
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-08-18	2015-09-16	2015-08-18
Culture_End_Date	2015-09-08	2015-10-14	2015-09-08
Passage	5	4	5

QC Stats

Experiment QC

	677	677-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	676_01	676_02	676_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	676_01	676_02	676_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A04	A03	none
inline_barcode_2	F05	G07	none
i5_barcode	504	504	503
i7_barcode	706	706	705

Sequencing Information


Rep_UID	676_01	676_02	676_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/677.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	677	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
677.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	677	final_peaks	peaks	eCLIP	hg19

Data Submission Information

Files

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	Status	Project
gene-yeo:4190_CLIP1_rep1.vs.4190_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF497HPI	file_finalPeaks	eCLIP	4190	Released	ENCODE4
gene-yeo:4045_CLIP1_rep1.vs.4045_CLIP2_rep2.sorted.nh.bb	ENCFF829NRB	file_finalPeaks_bb	eCLIP	4190	Released	ENCODE4