AARS      eCLIP in K562

Experiment Information (Status: Released)
624624-control
Exp_UID624624
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR825SVOENCSR696PRX
ENCODE_aliasgene-yeo:624gene-yeo:624-control
RBPAARSAARS
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB346SATENCAB346SAT
AntibodyA303-475AA303-475A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID295325




Replicate Information
Rep_UID624_01624_02624_INPUT
Exp UID624624624
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB437FMXENCLB293LCZENCLB582ELR
ENCODE_aliasgene-yeo:624_01gene-yeo:624_02gene-yeo:624_INPUT
Biosample NameK562_081815K562_091615K562_081815
Biosample_ENCODE_AccessionENCBS175JIHENCBS505ILKENCBS175JIH
Biosample_ENCODE_Aliasgene-yeo:K562_081815gene-yeo:K562_091615gene-yeo:K562_081815
Cell_LineK562K562K562
Culture_Start_Date2015-08-182015-09-162015-08-18
Culture_End_Date2015-09-082015-10-142015-09-08
Passage545




QC Stats
Experiment QC
624624-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID624_01624_02624_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID624_01624_02624_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A03A04none
inline_barcode_2G07F05none
i5_barcode501501502
i7_barcode704704703




Sequencing Information
Rep_UID624_01624_02624_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/624.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz624final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
624.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz624final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=624)