ENCORE eCLIP:560

HNRNPL eCLIP in K562

Experiment Information (Status: Released)

	560	560-control
Exp_UID	560	560
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR795CAI	ENCSR299AAB
ENCODE_alias	gene-yeo:560	gene-yeo:560-control
RBP	HNRNPL	HNRNPL
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB734ADP	ENCAB734ADP
Antibody	ab6106	ab6106
Lot_num	GR30383-24	GR30383-24
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	244	270

Replicate Information


Rep_UID	560_INPUT	560_01	560_02
Exp UID	560	560	560
Replicate_type	control	rep1	rep2
ENCODE_ACCESSION	ENCLB724LCD	ENCLB460IOL	ENCLB757VFG
ENCODE_alias	gene-yeo:560_INPUT	gene-yeo:560_01	gene-yeo:560_02
Biosample Name	K562_070715	K562_070715	K562_081815
Biosample_ENCODE_Accession	ENCBS517UIR	ENCBS517UIR	ENCBS175JIH
Biosample_ENCODE_Alias	gene-yeo:K562_070715	gene-yeo:K562_070715	gene-yeo:K562_081815
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-07-07	2015-07-07	2015-08-18
Culture_End_Date	2015-08-04	2015-08-04	2015-09-08
Passage	5	5	5

QC Stats

Experiment QC

	560	560-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	560_INPUT	560_01	560_02
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	560_INPUT	560_01	560_02
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	none	A04	A03
inline_barcode_2	none	F05	G07
i5_barcode	505	506	506
i7_barcode	703	704	704

Sequencing Information


Rep_UID	560_INPUT	560_01	560_02
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/560.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	560	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
560.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	560	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=560)