ENCORE eCLIP:546

NKRF eCLIP in HepG2

Experiment Information (Status: Released)

	546	546-control
Exp_UID	546	546
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR277DEO	ENCSR479XOI
ENCODE_alias	gene-yeo:546	gene-yeo:546-control
RBP	NKRF	NKRF
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB893CIV	ENCAB893CIV
Antibody	A304-016A	A304-016A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	239	265

Replicate Information


Rep_UID	546_INPUT	546_01	546_02
Exp UID	546	546	546
Replicate_type	control	rep1	rep2
ENCODE_ACCESSION	ENCLB578WMP	ENCLB091DLX	ENCLB767GDI
ENCODE_alias	gene-yeo:546_INPUT	gene-yeo:546_01	gene-yeo:546_02
Biosample Name	HepG2_061215	HepG2_061215	HepG2_081815
Biosample_ENCODE_Accession	ENCBS308ZPA	ENCBS308ZPA	ENCBS881CIF
Biosample_ENCODE_Alias	gene-yeo:HepG2_061215	gene-yeo:HepG2_061215	gene-yeo:HepG2_081815
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-06-12	2015-06-12	2015-08-18
Culture_End_Date	2015-06-30	2015-06-30	2015-09-10
Passage	3	3	4

QC Stats

Experiment QC

	546	546-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	546_INPUT	546_01	546_02
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	546_INPUT	546_01	546_02
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	none	A01	C01
inline_barcode_2	none	B06	D08fixed
i5_barcode	506	505	505
i7_barcode	705	706	706

Sequencing Information


Rep_UID	546_INPUT	546_01	546_02
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/546.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	546	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
546.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	546	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=546)