ENCORE eCLIP:537

AGGF1 eCLIP in K562

Experiment Information (Status: Released)

	537	537-control
Exp_UID	537	537
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR725ARB	ENCSR910LAN
ENCODE_alias	gene-yeo:537	gene-yeo:537-control
RBP	AGGF1	AGGF1
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB191KLA	ENCAB191KLA
Antibody	A303-634A	A303-634A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	234	260

Replicate Information


Rep_UID	537_INPUT	537_01	537_02
Exp UID	537	537	537
Replicate_type	control	rep1	rep2
ENCODE_ACCESSION	ENCLB681ILV	ENCLB332NWU	ENCLB533WPB
ENCODE_alias	gene-yeo:537_INPUT	gene-yeo:537_01	gene-yeo:537_02
Biosample Name	K562_070715	K562_070715	K562_081815
Biosample_ENCODE_Accession	ENCBS517UIR	ENCBS517UIR	ENCBS175JIH
Biosample_ENCODE_Alias	gene-yeo:K562_070715	gene-yeo:K562_070715	gene-yeo:K562_081815
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-07-07	2015-07-07	2015-08-18
Culture_End_Date	2015-08-04	2015-08-04	2015-09-08
Passage	5	5	5

QC Stats

Experiment QC

	537	537-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	537_INPUT	537_01	537_02
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	537_INPUT	537_01	537_02
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	none	A03	A04
inline_barcode_2	none	G07	F05
i5_barcode	504	503	503
i7_barcode	705	706	706

Sequencing Information


Rep_UID	537_INPUT	537_01	537_02
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/537.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	537	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
537.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	537	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=537)