U2AF2      eCLIP in K562

Experiment Information (Status: Released)
242242-control
Exp_UID242242
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR893RAVENCSR871RTL
ENCODE_aliasgene-yeo:242gene-yeo:242-control
RBPU2AF2U2AF2
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB511TCTENCAB511TCT
AntibodyA303-665AA303-665A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID1956




Replicate Information
Rep_UID242_01242_02242_INPUT
Exp UID242242242
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB060SHSENCLB959MMVENCLB446YAI
ENCODE_aliasgene-yeo:242_01gene-yeo:242_02gene-yeo:242_INPUT
Biosample NameK562_020415K562_110314AK562_020415
Biosample_ENCODE_AccessionENCBS445ZHJENCBS126AJRENCBS445ZHJ
Biosample_ENCODE_Aliasgene-yeo:K562_020415gene-yeo:K562_110314Agene-yeo:K562_020415
Cell_LineK562K562K562
Culture_Start_Date2014-01-022014-10-032014-01-02
Culture_End_Date2015-02-042014-11-032015-02-04
Passage464




QC Stats
Experiment QC
242242-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID242_01242_02242_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID242_01242_02242_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A01C01none
inline_barcode_2B06D08fixednone
i5_barcode502502502
i7_barcode704704703




Sequencing Information
Rep_UID242_01242_02242_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/242.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz242final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
242.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz242final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=242)