ENCORE eCLIP:211

IGF2BP3 eCLIP in HepG2

Experiment Information (Status: Released)

	211	211-control
Exp_UID	211	211
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR993OLA	ENCSR077KVG
ENCODE_alias	gene-yeo:211	gene-yeo:211-control
RBP	IGF2BP3	IGF2BP3
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB934MDN	ENCAB934MDN
Antibody	RN009P	RN009P
Lot_num	2	2
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	5	42

Replicate Information


Rep_UID	211_01	211_02	211_INPUT
Exp UID	211	211	211
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB132ATR	ENCLB177QDR	ENCLB734PHN
ENCODE_alias	gene-yeo:211_01	gene-yeo:211_02	gene-yeo:211_INPUT
Biosample Name	HepG2_031414	HepG2_082214_batchA	HepG2_031414
Biosample_ENCODE_Accession	ENCBS537ADD	ENCBS547JWV	ENCBS537ADD
Biosample_ENCODE_Alias	gene-yeo:HepG2_031414	gene-yeo:HepG2_082214_batchA	gene-yeo:HepG2_031414
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2014-02-11	2014-07-23	2014-02-11
Culture_End_Date	2014-03-14	2014-08-21	2014-03-14
Passage	4	4	4

QC Stats

Experiment QC

	211	211-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	211_01	211_02	211_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	211_01	211_02	211_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A01	C01	none
inline_barcode_2	B06	D08fixed	none
i5_barcode	503	503	504
i7_barcode	703	703	703

Sequencing Information


Rep_UID	211_01	211_02	211_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/211.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	211	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
211.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	211	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=211)