TNRC18

General Information

Gene Name : TNRC18
Gene ID : ENSG00000182095.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TNRC18)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TNRC18	ENSG00000182095.14	6.51	12.42	9.46	ENCSR000AEF
HepG2	TNRC18	ENSG00000182095.14	47.45	33.80	40.62	ENCSR985KAT
K562	TNRC18	ENSG00000182095.14	16.41	15.02	15.71	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TNRC18 is not avaliable on ENCORE database.

Proteins bound to RNA

TNRC18 RNA is bound by 74 proteins.

CanvasJS.com

eCLIP assay for TNRC18 is not avaliable on ENCORE database.

74 proteins are bound to TNRC18 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	5352542	5352647	-	CDS,intron-Distal,intron-Proximal	5.11555	54.50226	HepG2	PCBP2
chr7	5459329	5459408	-	intron-Distal	3.32092	52.65683	HepG2	CSTF2T
chr7	5352518	5352542	-	CDS,intron-Distal	5.52459	48.98691	HepG2	PCBP2
chr7	5459758	5459846	-	intron-Distal	3.50456	40.63498	HepG2	CSTF2T
chr7	5395983	5396056	-	intron-Distal	7.46397	39.66571	HepG2	HNRNPM
chr7	5458913	5458984	-	intron-Distal	3.16308	38.61917	HepG2	CSTF2T
chr7	5352478	5352518	-	CDS,intron-Distal	5.57977	37.40449	HepG2	PCBP2
chr7	5459163	5459224	-	intron-Distal	4.37935	36.11269	HepG2	CSTF2T
chr7	5392562	5392614	-	intron-Distal	7.08510	35.56293	HepG2	HNRNPM
chr7	5394656	5394707	-	intron-Distal	7.08718	34.85497	HepG2	HNRNPM
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 579 entries

eCLIP assay for TNRC18 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TNRC18 is not available on ENCORE database.
128 RBPs can affect the levels of TNRC18.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TNRC18 is not available on ENCORE database.

128 RBPs can affect the gene expression of TNRC18 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TNRC18	ENSG00000182095.10	2066.93370	452.50160	2.19140	113.73400	110.93010	K562	EIF2S2
TNRC18	ENSG00000182095.10	3367.40890	1341.16840	1.32800	71.59840	69.06400	HepG2	SRSF5
TNRC18	ENSG00000182095.10	3038.35330	1441.94680	1.07520	61.63070	59.61160	HepG2	PUM1
TNRC18	ENSG00000182095.10	4246.57600	1896.90600	1.16260	60.17430	58.43390	HepG2	NELFE
TNRC18	ENSG00000182095.10	2916.72760	1302.43230	1.16300	44.23400	42.13590	HepG2	SLBP
TNRC18	ENSG00000182095.10	3036.48470	1583.76200	0.93890	36.44630	34.35750	HepG2	HNRNPF
TNRC18	ENSG00000182095.10	2219.60860	1307.22830	0.76370	27.41840	25.55450	HepG2	HNRNPL
TNRC18	ENSG00000182095.10	3754.69850	1766.87330	1.08740	25.84090	24.29750	HepG2	RECQL
TNRC18	ENSG00000182095.10	716.33840	1665.07580	-1.21690	25.66910	24.19360	HepG2	TAF15
TNRC18	ENSG00000182095.10	2619.75550	4213.98070	-0.68580	21.57930	20.40760	HepG2	ZNF622
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 145 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TNRC18 is not available on ENCORE database.

9 RBPs can affect the splicing of TNRC18 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TNRC18	ENSG00000182095.10	chr7	-	5433672	5433863	5430115	5430259	5434070	5434226	-0.17500	0.00011	0.03214	excluded	K562	SBDS
SE	TNRC18	ENSG00000182095.10	chr7	-	5460690	5461120	5434070	5434226	5463071	5463177	0.26000	0.00028	0.00706	included	HepG2	U2AF1
SE	TNRC18	ENSG00000182095.10	chr7	-	5369567	5369600	5364726	5364879	5372252	5372509	0.33500	0.00051	0.04610	included	HepG2	QKI
SE	TNRC18	ENSG00000182095.10	chr7	-	5401224	5401353	5399028	5399200	5401527	5401664	-0.12900	0.00063	0.06967	excluded	HepG2	SSB
SE	TNRC18	ENSG00000182095.10	chr7	-	5401224	5401353	5399028	5399200	5401527	5401664	-0.11900	0.00089	0.07922	excluded	HepG2	DDX59
SE	TNRC18	ENSG00000182095.10	chr7	-	5401224	5401353	5399028	5399200	5401527	5401664	0.15000	0.00093	0.02537	included	HepG2	HNRNPK
SE	TNRC18	ENSG00000182095.10	chr7	-	5401224	5401353	5399028	5399200	5401527	5401664	-0.23500	0.00114	0.06690	excluded	HepG2	SRSF9
SE	TNRC18	ENSG00000182095.10	chr7	-	5446780	5446905	5434070	5434226	5460690	5461120	0.06100	0.00122	0.03573	included	HepG2	SF3A3
SE	TNRC18	ENSG00000182095.10	chr7	-	5401224	5401353	5399028	5399200	5401527	5401664	-0.25200	0.00138	0.03322	excluded	HepG2	SRSF1
SE	TNRC18	ENSG00000182095.10	chr7	-	5369567	5369600	5364726	5364879	5372252	5372509	0.23500	0.00437	0.06794	included	HepG2	U2AF1

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TNRC18

General Information

Functions

Localization

Domains (AlphaFold: TNRC18)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TNRC18 is not avaliable on ENCORE database.

74 proteins are bound to TNRC18 RNA:

eCLIP assay for TNRC18 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TNRC18 is not available on ENCORE database.

128 RBPs can affect the gene expression of TNRC18 :

The Knockdown/knockout RNA-Seq assay for TNRC18 is not available on ENCORE database.

9 RBPs can affect the splicing of TNRC18 :

The Knockdown/knockout RNA-Seq assay for TNRC18 is not avaliable on ENCORE database.