TBC1D4

General Information

Gene Name : TBC1D4
Gene ID : ENSG00000136111.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TBC1D4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TBC1D4	ENSG00000136111.13	21.01	20.71	20.86	ENCSR000AEF
HepG2	TBC1D4	ENSG00000136111.13	27.95	26.65	27.30	ENCSR985KAT
K562	TBC1D4	ENSG00000136111.13	5.76	6.74	6.25	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TBC1D4 is not avaliable on ENCORE database.

Proteins bound to RNA

TBC1D4 RNA is bound by 41 proteins.

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eCLIP assay for TBC1D4 is not avaliable on ENCORE database.

41 proteins are bound to TBC1D4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr13	75971211	75971276	-	intron-Distal	6.01811	33.41898	HepG2	QKI
chr13	75971132	75971211	-	intron-Distal	6.22875	31.98766	HepG2	QKI
chr13	75878797	75878940	-	intron-Distal	5.15918	26.05631	HepG2	PTBP1
chr13	75884061	75884131	-	CDS,intron-Distal,intron-Proximal	4.70582	24.40170	HepG2	BCLAF1
chr13	75936121	75936195	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.73347	24.21084	HepG2	PRPF8
chr13	76052144	76052254	-	intron-Distal	4.48157	22.89514	HepG2	QKI
chr13	75988628	75988644	-	intron-Distal	5.56737	22.39828	HepG2	HNRNPL
chr13	75988644	75988658	-	intron-Distal	4.92489	22.15546	HepG2	HNRNPL
chr13	75880497	75880576	-	CDS,intron-Distal,intron-Proximal	3.77865	21.19068	HepG2	BCLAF1
chr13	75964921	75964999	-	intron-Distal	6.62831	19.77775	HepG2	PCBP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 177 entries

eCLIP assay for TBC1D4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TBC1D4 is not available on ENCORE database.
123 RBPs can affect the levels of TBC1D4.

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The Knockdown/knockout RNA-Seq assay for TBC1D4 is not available on ENCORE database.

123 RBPs can affect the gene expression of TBC1D4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TBC1D4	ENSG00000136111.8	1850.95060	4283.14600	-1.21040	70.25920	68.56000	HepG2	SSB
TBC1D4	ENSG00000136111.8	1391.92800	3261.14620	-1.22830	60.07570	58.02060	HepG2	DKC1
TBC1D4	ENSG00000136111.8	1874.24060	4131.85950	-1.14050	56.81690	55.11340	HepG2	NELFE
TBC1D4	ENSG00000136111.8	1861.74990	4367.56560	-1.23020	56.62490	54.87580	HepG2	RBM22
TBC1D4	ENSG00000136111.8	1038.14390	2838.56210	-1.45120	43.79080	41.58040	HepG2	DDX21
TBC1D4	ENSG00000136111.8	1239.63140	2875.37280	-1.21380	41.28030	39.76930	HepG2	TIAL1
TBC1D4	ENSG00000136111.8	1003.24060	2677.99220	-1.41650	41.62940	39.71820	HepG2	HNRNPA1
TBC1D4	ENSG00000136111.8	861.44930	2177.71620	-1.33800	38.41350	36.58720	HepG2	RPS19
TBC1D4	ENSG00000136111.8	1766.57490	3073.09540	-0.79870	37.62690	35.73760	HepG2	SMN1
TBC1D4	ENSG00000136111.8	2878.70320	4933.05440	-0.77710	35.25130	33.99220	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 141 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TBC1D4 is not available on ENCORE database.

6 RBPs can affect the splicing of TBC1D4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TBC1D4	ENSG00000136111.8	chr13	-	75915260	75915371			75911056	75911176	75915631	75915723	-0.52200	0.00000	0.00000	excluded	K562	SF3B4
SE	TBC1D4	ENSG00000136111.8	chr13	-	75915260	75915371			75911056	75911176	75915631	75915723	-0.25700	0.00000	0.00000	excluded	HepG2	SF3B4
SE	TBC1D4	ENSG00000136111.8	chr13	-	75880448	75880607			75876378	75876537	75884077	75884287	-0.07900	0.00001	0.00016	excluded	HepG2	U2AF2
MXE	TBC1D4	ENSG00000136111.8	chr13	-	75876378	75876537	75880448	75880607	75873465	75873710	75884077	75884287	-0.17000	0.00009	0.06421	2included	HepG2	GRSF1
SE	TBC1D4	ENSG00000136111.8	chr13	-	75901887	75901962			75900332	75900559	75911056	75911176	-0.05400	0.00012	0.00227	excluded	HepG2	U2AF2
MXE	TBC1D4	ENSG00000136111.8	chr13	-	75876378	75876537	75880448	75880607	75873465	75873710	75884077	75884287	-0.13400	0.00112	0.06777	2included	HepG2	G3BP1
SE	TBC1D4	ENSG00000136111.8	chr13	-	75898372	75898537			75886873	75887034	75900332	75900559	0.29000	0.00246	0.03565	included	K562	PUS1
SE	TBC1D4	ENSG00000136111.8	chr13	-	75915260	75915371			75911056	75911176	75915631	75915723	-0.12200	0.00277	0.06722	excluded	HepG2	SF3A3

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TBC1D4

General Information

Functions

Localization

Domains (AlphaFold: TBC1D4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TBC1D4 is not avaliable on ENCORE database.

41 proteins are bound to TBC1D4 RNA:

eCLIP assay for TBC1D4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TBC1D4 is not available on ENCORE database.

123 RBPs can affect the gene expression of TBC1D4 :

The Knockdown/knockout RNA-Seq assay for TBC1D4 is not available on ENCORE database.

6 RBPs can affect the splicing of TBC1D4 :

The Knockdown/knockout RNA-Seq assay for TBC1D4 is not avaliable on ENCORE database.