SEMA6A

General Information

Gene Name       : SEMA6A
Gene ID             : ENSG00000092421.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SEMA6A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SEMA6AENSG00000092421.160.580.900.74ENCSR000AEF
HepG2SEMA6AENSG00000092421.1612.5310.7411.63ENCSR985KAT
K562SEMA6AENSG00000092421.160.000.010.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SEMA6A is not avaliable on ENCORE database.



Proteins bound to RNA
  • SEMA6A RNA is bound by 4 proteins.  







eCLIP assay for SEMA6A is not avaliable on ENCORE database.





4 proteins are bound to SEMA6A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5115781872115781928-3'-UTR,intron-Distal3.624225.03298HepG2HNRNPL
chr5115782257115782308-3'-UTR,intron-Distal,intron-Proximal3.902773.06143HepG2IGF2BP1
chr5115782472115782536-CDS,intron-Distal3.974973.52163HepG2IGF2BP1
chr5115909598115909653-intron-Distal4.195534.61649HepG2CSTF2T
chr5115824371115824423-intron-Distal4.116373.45799HepG2U2AF2
chr5115908296115908392-intron-Distal3.011855.22945HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SEMA6A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SEMA6A is not available on ENCORE database.

  • 135 RBPs can affect the levels of SEMA6A.  








The Knockdown/knockout RNA-Seq assay for SEMA6A is not available on ENCORE database.





135 RBPs can affect the gene expression of SEMA6A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SEMA6AENSG00000092421.12912.54530566.811500.686907.352505.70190HepG2AATF
SEMA6AENSG00000092421.12672.981301408.87570-1.0659014.5593012.69410HepG2ABCF1
SEMA6AENSG00000092421.121493.42240901.988000.7273018.1617016.89550HepG2ACO1
SEMA6AENSG00000092421.12963.66090351.964901.4530019.4634018.18530HepG2AKAP1
SEMA6AENSG00000092421.12146.55620291.19940-0.990604.735103.71980HepG2ASCC1
SEMA6AENSG00000092421.121102.145101636.56760-0.570408.686507.58320HepG2AUH
SEMA6AENSG00000092421.12378.07930678.61220-0.843906.940405.59160HepG2BCLAF1
SEMA6AENSG00000092421.12293.936302059.21890-2.8085062.6174060.56730HepG2BOP1
SEMA6AENSG00000092421.12792.003101231.99390-0.637408.823007.55620HepG2CALR
SEMA6AENSG00000092421.121602.98320901.808600.8298024.4902022.95770HepG2CKAP4
SEMA6AENSG00000092421.12491.89810703.71380-0.516602.358801.65600HepG2CNOT7
SEMA6AENSG00000092421.12838.818601890.51990-1.1724013.7794012.38310HepG2CPSF6
SEMA6AENSG00000092421.12672.75760982.26660-0.546006.707805.13230HepG2YBX3
SEMA6AENSG00000092421.12814.206001108.24290-0.444805.363104.52070HepG2CELF1
SEMA6AENSG00000092421.12686.47180834.21730-0.281202.703601.87880HepG2DDX19B
SEMA6AENSG00000092421.12510.64800983.57860-0.945709.418107.48430HepG2DDX1
SEMA6AENSG00000092421.12240.07940625.89730-1.3824010.715609.47970HepG2DDX21
SEMA6AENSG00000092421.12308.20020612.04740-0.989809.341407.69810HepG2DDX24
SEMA6AENSG00000092421.12300.54950718.46050-1.2573011.973109.61180HepG2DDX27
SEMA6AENSG00000092421.12172.85080337.10840-0.963706.170605.27100HepG2DDX3X
SEMA6AENSG00000092421.12826.597801206.65410-0.545805.606903.80870HepG2DDX47
SEMA6AENSG00000092421.121008.56470720.436200.485304.703102.98360HepG2DDX52
SEMA6AENSG00000092421.123104.684502146.809500.532202.763801.78560HepG2DDX59
SEMA6AENSG00000092421.12722.346001237.33480-0.776509.833908.07250HepG2DDX5
SEMA6AENSG00000092421.12649.35230289.694601.1644011.9143010.73970HepG2DDX6
SEMA6AENSG00000092421.12274.49280930.21960-1.7608037.5641034.83960HepG2DHX30
SEMA6AENSG00000092421.12421.91640862.96240-1.0323020.3735018.93290HepG2DKC1
SEMA6AENSG00000092421.12274.85350964.42940-1.8110042.3981040.08460HepG2DNAJC21
SEMA6AENSG00000092421.12509.68520859.46450-0.753807.533406.09390HepG2EEF2
SEMA6AENSG00000092421.12413.62930590.76460-0.514203.278902.11260HepG2EIF3G
SEMA6AENSG00000092421.12967.64600299.583101.6914022.0987020.29730HepG2EIF4B
SEMA6AENSG00000092421.12515.152301175.61350-1.1903031.5428029.38880HepG2EIF4G1
SEMA6AENSG00000092421.12558.103001126.15530-1.0128015.1330013.34080HepG2EIF4G2
SEMA6AENSG00000092421.12911.633501220.38850-0.420803.573302.33860HepG2ESF1
SEMA6AENSG00000092421.12949.992301879.14810-0.9841018.0278016.71460HepG2ETF1
SEMA6AENSG00000092421.121185.09270881.418200.427004.125103.10530HepG2EWSR1
SEMA6AENSG00000092421.12335.37060614.34130-0.873305.028202.41820HepG2FASTKD1
SEMA6AENSG00000092421.122258.117401422.608300.666506.743605.59650HepG2FIP1L1
SEMA6AENSG00000092421.12298.67210639.10610-1.0975011.273409.06180HepG2FKBP4
SEMA6AENSG00000092421.12688.254201114.83560-0.695806.591904.07710HepG2FMR1
SEMA6AENSG00000092421.12509.871001893.66720-1.8930016.2081013.88660HepG2FTO
SEMA6AENSG00000092421.12471.93010247.398600.931608.771007.41270HepG2FUBP3
SEMA6AENSG00000092421.121285.15410811.453700.663304.829703.38310HepG2FUS
SEMA6AENSG00000092421.121047.86880310.506301.7547033.1938031.12570HepG2FXR1
SEMA6AENSG00000092421.12186.01710287.95490-0.630403.135402.42890HepG2G3BP1
SEMA6AENSG00000092421.12434.41920614.14630-0.499503.531902.37350HepG2GNB2L1
SEMA6AENSG00000092421.12848.308302143.17440-1.3371023.1731021.51620HepG2GPKOW
SEMA6AENSG00000092421.121549.03490651.413501.2496014.7461012.22470HepG2GRSF1
SEMA6AENSG00000092421.121138.91910861.150400.403205.277103.97390HepG2HDGF
SEMA6AENSG00000092421.12330.32670973.67020-1.5595023.1056021.55630HepG2HNRNPA1
SEMA6AENSG00000092421.12864.011701095.12480-0.342003.518102.48270HepG2HNRNPA2B1
SEMA6AENSG00000092421.12861.234301083.06800-0.330602.280501.64560HepG2HNRNPC
SEMA6AENSG00000092421.12350.25180609.54660-0.799305.812503.62500HepG2HNRNPD
SEMA6AENSG00000092421.12786.198501835.12920-1.2229045.0521042.81890HepG2HNRNPF
SEMA6AENSG00000092421.12781.60540291.779401.4215021.6638019.88350HepG2HNRNPK
SEMA6AENSG00000092421.121375.214501085.430300.341302.090601.49420HepG2HNRNPL
SEMA6AENSG00000092421.12740.633402045.25970-1.4655026.1141024.50150HepG2HNRNPLL
SEMA6AENSG00000092421.121218.16290981.488600.311602.433101.53950HepG2HNRNPM
SEMA6AENSG00000092421.12584.550301807.08300-1.6283054.6896052.21950HepG2IGF2BP1
SEMA6AENSG00000092421.12816.68020274.779801.571409.040407.34080HepG2IGF2BP3
SEMA6AENSG00000092421.12785.471801098.99400-0.484605.772804.74860HepG2ILF2
SEMA6AENSG00000092421.12309.20400686.02320-1.1497010.381007.74800HepG2ILF3
SEMA6AENSG00000092421.12594.94560874.05550-0.555003.206301.85620HepG2KRR1
SEMA6AENSG00000092421.121487.402802200.73870-0.565204.678303.59000HepG2LARP4
SEMA6AENSG00000092421.12968.64950601.823900.686507.121605.34740HepG2LARP7
SEMA6AENSG00000092421.12785.29350312.327501.3301016.1675014.73570HepG2MATR3
SEMA6AENSG00000092421.121344.73370730.094100.881102.635001.60730HepG2METAP2
SEMA6AENSG00000092421.12749.010301151.28670-0.620207.442906.17710HepG2MSI2
SEMA6AENSG00000092421.12879.154902085.63080-1.2463014.7250012.49860HepG2MTPAP
SEMA6AENSG00000092421.121332.31500966.758700.462604.783203.19060HepG2NAA15
SEMA6AENSG00000092421.12366.41790544.13780-0.570504.232102.46410HepG2NIP7
SEMA6AENSG00000092421.121414.009401181.577500.259002.278901.58710HepG2NOL12
SEMA6AENSG00000092421.12646.857901813.42470-1.4872018.2904016.57210HepG2NSUN2
SEMA6AENSG00000092421.12318.42220643.15970-1.014206.816205.38140HepG2PABPC1
SEMA6AENSG00000092421.12672.92220275.329001.2892026.3650024.81460HepG2PCBP1
SEMA6AENSG00000092421.12387.10750631.05130-0.705003.941702.12160HepG2PNPT1
SEMA6AENSG00000092421.12713.37830959.61390-0.427804.629203.70000HepG2PPIL4
SEMA6AENSG00000092421.12763.188801457.61620-0.9335012.0037010.55900HepG2PRPF4
SEMA6AENSG00000092421.12404.43580592.40920-0.550703.298102.42380HepG2PRPF8
SEMA6AENSG00000092421.12715.11450280.195001.3516028.4725027.07730HepG2PTBP1
SEMA6AENSG00000092421.12634.453701127.93200-0.8301011.9782010.85720HepG2PUF60
SEMA6AENSG00000092421.12767.319701196.48060-0.640908.881307.71310HepG2PUM2
SEMA6AENSG00000092421.122947.79070741.254001.9915028.9535026.91560HepG2RAVER1
SEMA6AENSG00000092421.121908.670301525.502300.323203.339502.40600HepG2RBM15
SEMA6AENSG00000092421.121128.285601570.58890-0.477205.932305.24490HepG2RBM22
SEMA6AENSG00000092421.12571.12060275.365401.0523013.3764011.96120HepG2RBM25
SEMA6AENSG00000092421.121013.72230725.726800.482103.206502.13510HepG2RBM27
SEMA6AENSG00000092421.12398.33150589.32460-0.565103.867602.61010HepG2RCC2
SEMA6AENSG00000092421.12574.16410311.799000.880704.541603.87980HepG2NELFE
SEMA6AENSG00000092421.12830.33440290.454801.5153037.2826035.51880HepG2RECQL
SEMA6AENSG00000092421.12541.696301976.81530-1.8676058.2989056.16830HepG2RPLP0
SEMA6AENSG00000092421.12984.05360678.889600.535505.393204.56780HepG2RPS19
SEMA6AENSG00000092421.12380.18560669.26920-0.815908.567407.21510HepG2RPS2
SEMA6AENSG00000092421.12280.07490706.52850-1.3349014.5551012.78120HepG2RPS3A
SEMA6AENSG00000092421.121241.70440586.026201.0832014.3292012.78550HepG2RRP9
SEMA6AENSG00000092421.12657.80500958.11700-0.542507.319306.34290HepG2SAFB2
SEMA6AENSG00000092421.12442.62600665.32260-0.588003.853102.31460HepG2SART3
SEMA6AENSG00000092421.12484.89360681.27450-0.490603.455102.40000HepG2SERBP1
SEMA6AENSG00000092421.12725.37060291.652001.3144026.4430024.93540HepG2SF3B4
SEMA6AENSG00000092421.12727.717701081.54170-0.571609.786708.59220HepG2SLBP
SEMA6AENSG00000092421.121528.683102252.55680-0.559303.557602.66740HepG2SNRNP70
SEMA6AENSG00000092421.12915.433201773.86730-0.9544016.4871015.53300HepG2SRFBP1
SEMA6AENSG00000092421.12483.50190304.448900.667202.838702.36110HepG2SRSF1
SEMA6AENSG00000092421.123769.288802178.139400.791105.399203.96160HepG2SRSF3
SEMA6AENSG00000092421.121416.528801113.686500.346904.435603.67600HepG2SRSF5
SEMA6AENSG00000092421.12797.239501802.93800-1.1773041.6002039.56620HepG2SRSF7
SEMA6AENSG00000092421.12665.26570247.709001.4252032.7695031.27660HepG2SRSF9
SEMA6AENSG00000092421.12186.995001540.04060-3.0419081.2616079.48010HepG2SSB
SEMA6AENSG00000092421.121416.55510871.466600.700807.151405.21940HepG2SSRP1
SEMA6AENSG00000092421.12618.14460950.13520-0.620204.377102.85290HepG2STAU1
SEMA6AENSG00000092421.12451.18250614.56560-0.445902.374401.36600HepG2STIP1
SEMA6AENSG00000092421.12460.09200692.72740-0.590402.927501.68820HepG2SUB1
SEMA6AENSG00000092421.121741.701301266.553000.459509.121308.10280HepG2SUCLG1
SEMA6AENSG00000092421.12133.72470764.36810-2.5150045.9572043.86980HepG2SUPV3L1
SEMA6AENSG00000092421.12660.88640273.726601.2716023.1764021.77270HepG2TAF15
SEMA6AENSG00000092421.121393.893601993.16950-0.515904.298503.42110HepG2TARDBP
SEMA6AENSG00000092421.12504.54870855.98240-0.762603.423302.24200HepG2TBRG4
SEMA6AENSG00000092421.12379.04530251.436800.592104.453403.40090HepG2TIA1
SEMA6AENSG00000092421.12239.582801045.29240-2.1253055.8232054.11740HepG2TIAL1
SEMA6AENSG00000092421.121522.701901054.797400.529607.738906.87310HepG2TRIM56
SEMA6AENSG00000092421.12749.096301101.96630-0.556906.145604.77250HepG2TUFM
SEMA6AENSG00000092421.121835.294701216.903700.592706.593805.63740HepG2U2AF1
SEMA6AENSG00000092421.123494.197501060.222301.720508.410506.60620HepG2U2AF2
SEMA6AENSG00000092421.12738.902801166.43010-0.658605.473604.27320HepG2UBE2L3
SEMA6AENSG00000092421.12801.57200451.557800.827807.169305.93980HepG2UCHL5
SEMA6AENSG00000092421.12468.69290890.30060-0.9256019.3302017.80760HepG2UPF1
SEMA6AENSG00000092421.12281.42500700.01230-1.3146012.5248010.31060HepG2UPF2
SEMA6AENSG00000092421.12504.45570859.54980-0.7689012.1953011.07420HepG2UTP3
SEMA6AENSG00000092421.12224.94170632.83340-1.4923016.8417014.23990HepG2XPO5
SEMA6AENSG00000092421.121329.36430728.962900.866707.323605.32570HepG2XRCC5
SEMA6AENSG00000092421.121304.70080815.211300.678405.042203.63940HepG2XRCC6
SEMA6AENSG00000092421.12317.24190752.43560-1.2460015.2418013.56800HepG2XRN2
SEMA6AENSG00000092421.12310.156701438.56410-2.2136036.6525034.76160HepG2ZC3H8
SEMA6AENSG00000092421.121166.51630979.159800.252502.811802.26190HepG2ZNF622
SEMA6AENSG00000092421.1213.294501.086403.613002.343001.45480K562SF3B1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SEMA6A is not available on ENCORE database.






No RBPs affect the alternative splcing events of SEMA6A on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SEMA6A is not avaliable on ENCORE database.