RWDD3

General Information

Gene Name : RWDD3
Gene ID : ENSG00000122481.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RWDD3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RWDD3	ENSG00000122481.16	14.39	10.17	12.28	ENCSR000AEF
HepG2	RWDD3	ENSG00000122481.16	8.30	18.71	13.51	ENCSR985KAT
K562	RWDD3	ENSG00000122481.16	24.42	22.10	23.26	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RWDD3 is not avaliable on ENCORE database.

Proteins bound to RNA

RWDD3 RNA is bound by 2 proteins.

CanvasJS.com

eCLIP assay for RWDD3 is not avaliable on ENCORE database.

2 proteins are bound to RWDD3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	95703581	95703664	+	intron-Distal	5.07289	8.61835	K562	TARDBP
chr1	95699816	95699872	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.22115	6.42503	K562	DDX3X
chr1	95708709	95708786	+	intron-Distal	4.55605	4.92524	K562	TARDBP
chr1	95699750	95699816	+	5'-UTR,CDS,intron-Distal	4.82643	4.54356	K562	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 4 of 4 entries

eCLIP assay for RWDD3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RWDD3 is not available on ENCORE database.
37 RBPs can affect the levels of RWDD3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RWDD3 is not available on ENCORE database.

37 RBPs can affect the gene expression of RWDD3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RWDD3	ENSG00000122481.12	257.63930	502.21610	-0.96300	8.48000	7.24760	K562	SRSF1
RWDD3	ENSG00000122481.12	627.20470	429.15940	0.54730	5.92870	5.23190	HepG2	SSB
RWDD3	ENSG00000122481.12	354.58140	498.14120	-0.49040	4.65770	3.93070	HepG2	PUM1
RWDD3	ENSG00000122481.12	321.67370	463.32490	-0.52640	4.41860	3.66110	HepG2	SRSF5
RWDD3	ENSG00000122481.12	237.53800	404.76870	-0.76890	3.72240	3.01530	HepG2	DDX6
RWDD3	ENSG00000122481.12	221.03550	313.28190	-0.50320	3.36050	2.77460	HepG2	ZNF622
RWDD3	ENSG00000122481.12	268.47280	446.80700	-0.73490	3.45650	2.75240	HepG2	NCBP2
RWDD3	ENSG00000122481.12	544.84600	360.63510	0.59520	3.47410	2.66390	K562	G3BP2
RWDD3	ENSG00000122481.12	218.41630	326.13410	-0.57840	3.16380	2.53130	K562	HNRNPC
RWDD3	ENSG00000122481.12	263.31300	375.03150	-0.51020	3.29250	2.35860	K562	SF3B4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 37 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RWDD3 is not available on ENCORE database.

17 RBPs can affect the splicing of RWDD3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RWDD3	ENSG00000122481.12	chr1	+	95702903	95703016			95699769	95699871	95712097	95712213	-0.52400	0.00000	0.00000	excluded	K562	SRSF1
SE	RWDD3	ENSG00000122481.12	chr1	+	95702903	95703016			95699769	95699871	95709766	95709967	-0.30100	0.00000	0.00609	excluded	K562	TROVE2
SE	RWDD3	ENSG00000122481.12	chr1	+	95709766	95710254			95699710	95699871	95712097	95712213	-0.49600	0.00000	0.00006	excluded	HepG2	SRSF1
MXE	RWDD3	ENSG00000122481.12	chr1	+	95709766	95709880	95712097	95712213	95699710	95699871	95712311	95712781	0.23400	0.00000	0.00026	1included	K562	AGGF1
MXE	RWDD3	ENSG00000122481.12	chr1	+	95709766	95710254	95712097	95712213	95699710	95699871	95712311	95712781	0.23200	0.00000	0.00034	1included	K562	AGGF1
MXE	RWDD3	ENSG00000122481.12	chr1	+	95709766	95710254	95712097	95712213	95705332	95705465	95712311	95712773	-0.19600	0.00000	0.00018	2included	K562	SRSF1
MXE	RWDD3	ENSG00000122481.12	chr1	+	95709766	95710254	95712097	95712213	95699710	95699871	95712311	95712781	0.21000	0.00001	0.00131	1included	K562	TRA2A
MXE	RWDD3	ENSG00000122481.12	chr1	+	95709766	95710254	95712097	95712213	95705332	95705465	95712311	95712773	-0.20600	0.00002	0.00082	2included	HepG2	SRSF1
SE	RWDD3	ENSG00000122481.12	chr1	+	95702903	95703016			95699769	95699871	95709766	95709967	-0.41200	0.00003	0.00086	excluded	K562	HNRNPC
SE	RWDD3	ENSG00000122481.12	chr1	+	95712097	95712213			95699780	95699871	95712311	95712773	-0.18700	0.00004	0.00070	excluded	K562	AQR

Showing 1 to 10 of 40 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RWDD3

General Information

Functions

Localization

Domains (AlphaFold: RWDD3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RWDD3 is not avaliable on ENCORE database.

2 proteins are bound to RWDD3 RNA:

eCLIP assay for RWDD3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RWDD3 is not available on ENCORE database.

37 RBPs can affect the gene expression of RWDD3 :

The Knockdown/knockout RNA-Seq assay for RWDD3 is not available on ENCORE database.

17 RBPs can affect the splicing of RWDD3 :

The Knockdown/knockout RNA-Seq assay for RWDD3 is not avaliable on ENCORE database.