RBL1

General Information

Gene Name : RBL1
Gene ID : ENSG00000080839.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RBL1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RBL1	ENSG00000080839.11	22.91	16.76	19.84	ENCSR000AEF
HepG2	RBL1	ENSG00000080839.11	7.88	16.54	12.21	ENCSR985KAT
K562	RBL1	ENSG00000080839.11	12.61	13.76	13.18	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RBL1 is not avaliable on ENCORE database.

Proteins bound to RNA

RBL1 RNA is bound by 14 proteins.

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eCLIP assay for RBL1 is not avaliable on ENCORE database.

14 proteins are bound to RBL1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	35724310	35724399	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.72499	23.60852	HepG2	NCBP2
chr20	35689549	35689669	-	CDS,intron-Distal	4.50378	13.85602	HepG2	BCLAF1
chr20	35681481	35681572	-	intron-Distal	5.42862	12.05461	K562	KHSRP
chr20	35690491	35690584	-	CDS,intron-Distal	4.11681	8.61994	HepG2	GRWD1
chr20	35684555	35684644	-	CDS,intron-Distal,intron-Proximal	3.87811	8.25234	K562	ZNF622
chr20	35672495	35672577	-	CDS,intron-Distal	5.09887	8.18727	K562	ZNF622
chr20	35684552	35684648	-	CDS,intron-Distal,intron-Proximal	3.54317	7.42278	HepG2	BCLAF1
chr20	35681572	35681662	-	intron-Distal	3.79226	7.26586	K562	KHSRP
chr20	35672578	35672651	-	CDS,intron-Distal	3.74130	7.23562	HepG2	BCLAF1
chr20	35625199	35625271	-	3'-UTR,intron-Distal	4.36004	7.06234	K562	PUM2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 40 entries

eCLIP assay for RBL1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RBL1 is not available on ENCORE database.
104 RBPs can affect the levels of RBL1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RBL1 is not available on ENCORE database.

104 RBPs can affect the gene expression of RBL1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RBL1	ENSG00000080839.7	271.37290	948.89660	-1.80600	38.38230	36.62070	HepG2	BOP1
RBL1	ENSG00000080839.7	486.37680	1169.66230	-1.26590	37.85120	36.55360	HepG2	SRFBP1
RBL1	ENSG00000080839.7	282.13910	826.04110	-1.54980	28.59780	26.91130	HepG2	RPLP0
RBL1	ENSG00000080839.7	377.66460	828.30080	-1.13300	28.08450	26.80640	HepG2	ZNF622
RBL1	ENSG00000080839.7	474.67230	1035.58950	-1.12540	24.70180	23.46250	HepG2	RBM22
RBL1	ENSG00000080839.7	540.34540	1079.16170	-0.99800	23.01120	21.38190	HepG2	AUH
RBL1	ENSG00000080839.7	220.38050	696.56060	-1.66030	22.59780	21.00230	HepG2	SUPV3L1
RBL1	ENSG00000080839.7	369.97690	942.39030	-1.34890	21.03670	19.55890	HepG2	HNRNPLL
RBL1	ENSG00000080839.7	386.00220	932.77890	-1.27290	20.87030	19.12930	HepG2	SF3B1
RBL1	ENSG00000080839.7	375.65980	753.13310	-1.00350	19.15830	17.64150	HepG2	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 112 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RBL1 is not available on ENCORE database.

6 RBPs can affect the splicing of RBL1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	RBL1	ENSG00000080839.7	chr20	-	35661067	35661279	35663644	35663911	35651052	35651229	35668555	35668688	0.56300	0.00000	0.00000	1included	HepG2	U2AF2
SE	RBL1	ENSG00000080839.7	chr20	-	35695635	35695700			35695395	35695524	35696388	35696589	-0.35200	0.00029	0.01041	excluded	K562	AGGF1
SE	RBL1	ENSG00000080839.7	chr20	-	35695635	35695700			35695395	35695524	35696388	35696589	-0.39700	0.00303	0.05552	excluded	K562	U2AF1
A3SS	RBL1	ENSG00000080839.7	chr20	-	35668555	35668732			35668555	35668688	35672488	35672653	0.13800	0.00379	0.02264	longer	K562	AQR
SE	RBL1	ENSG00000080839.7	chr20	-	35695635	35695700			35695395	35695524	35696388	35696589	-0.26300	0.00488	0.06112	excluded	K562	PUS1
SE	RBL1	ENSG00000080839.7	chr20	-	35695635	35695700			35695395	35695524	35696388	35696589	-0.54200	0.00533	0.07965	excluded	K562	SRSF1
SE	RBL1	ENSG00000080839.7	chr20	-	35632104	35632269			35624751	35627332	35635813	35635962	-0.10200	0.00946	0.07774	excluded	K562	AQR

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBL1

General Information

Functions

Localization

Domains (AlphaFold: RBL1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RBL1 is not avaliable on ENCORE database.

14 proteins are bound to RBL1 RNA:

eCLIP assay for RBL1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RBL1 is not available on ENCORE database.

104 RBPs can affect the gene expression of RBL1 :

The Knockdown/knockout RNA-Seq assay for RBL1 is not available on ENCORE database.

6 RBPs can affect the splicing of RBL1 :

The Knockdown/knockout RNA-Seq assay for RBL1 is not avaliable on ENCORE database.