RABEPK

General Information

Gene Name       : RABEPK
Gene ID             : ENSG00000136933.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RABEPK)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RABEPKENSG00000136933.1620.4720.8520.66ENCSR000AEF
HepG2RABEPKENSG00000136933.1663.1452.1557.64ENCSR985KAT
K562RABEPKENSG00000136933.1638.0739.9138.99ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RABEPK is not avaliable on ENCORE database.



Proteins bound to RNA
  • RABEPK RNA is bound by 7 proteins.  







eCLIP assay for RABEPK is not avaliable on ENCORE database.





7 proteins are bound to RABEPK RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9127982874127982961+3'-UTR,CDS3.032234.96088HepG2GRWD1
chr9127995995127996111+3'-UTR,CDS3.227253.68829K562YBX3
chr9127963050127963125+5'-UTR,CDS,intron-Proximal3.397754.75864HepG2DDX3X
chr9127963049127963142+5'-UTR,CDS,intron-Proximal4.210777.63469K562DDX3X
chr9127962931127962987+5'-UTR,CDS,intron-Distal,intron-Proximal4.520693.07217HepG2NCBP2
chr9127962871127963014+5'-UTR,CDS,intron-Distal,intron-Proximal3.760205.90734HepG2DDX3X
chr9127965286127965305+5'-UTR,CDS,intron-Distal,intron-Proximal3.752894.41267HepG2PPIG
chr9127965305127965360+CDS,intron-Distal,intron-Proximal3.758644.68902HepG2PPIG
chr9127969900127970016+CDS,intron-Proximal3.558665.14253HepG2GRWD1
chr9127966999127967056+intron-Distal3.596079.50668HepG2PTBP1
chr9127966949127966999+intron-Distal3.422347.65224HepG2PTBP1
chr9127982703127982749+intron-Distal,intron-Proximal5.4077915.33546HepG2SF3B4
chr9127982703127982759+intron-Distal,intron-Proximal5.6994610.52887K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RABEPK is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RABEPK is not available on ENCORE database.

  • 100 RBPs can affect the levels of RABEPK.  








The Knockdown/knockout RNA-Seq assay for RABEPK is not available on ENCORE database.





100 RBPs can affect the gene expression of RABEPK :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RABEPKENSG00000136933.12375.69720570.55820-0.602804.700703.33650HepG2AATF
RABEPKENSG00000136933.12391.01880636.93140-0.703909.735608.73650HepG2ACO1
RABEPKENSG00000136933.12822.592101094.02220-0.411402.430401.92850HepG2AKAP1
RABEPKENSG00000136933.12283.03430513.87900-0.860504.911003.53740HepG2AKAP8
RABEPKENSG00000136933.12518.16930639.89450-0.304401.990301.32550HepG2AKAP8L
RABEPKENSG00000136933.12691.905201103.89150-0.6740011.6393010.39820HepG2AUH
RABEPKENSG00000136933.12512.11610804.58310-0.651804.480903.22430HepG2CCAR1
RABEPKENSG00000136933.121408.40370860.010200.711508.222906.94780HepG2CIRBP
RABEPKENSG00000136933.12134.39490372.24310-1.4698010.782209.30690HepG2CNOT7
RABEPKENSG00000136933.12745.11880497.412900.582906.718705.14170HepG2YBX3
RABEPKENSG00000136933.12608.65610954.44150-0.649009.107008.06600HepG2CELF1
RABEPKENSG00000136933.12450.70130621.98630-0.464702.879402.09210HepG2DDX55
RABEPKENSG00000136933.12676.39360900.26120-0.412502.349701.77650HepG2DDX6
RABEPKENSG00000136933.12615.90290865.41850-0.490703.463602.80420HepG2EIF2S1
RABEPKENSG00000136933.12662.48350931.19010-0.491202.675901.99840HepG2EIF4B
RABEPKENSG00000136933.12822.43640622.364400.402003.157902.26880HepG2EWSR1
RABEPKENSG00000136933.12286.68750731.81850-1.3520015.8786014.29380HepG2FIP1L1
RABEPKENSG00000136933.12520.53580682.44920-0.390702.534001.78060HepG2FUBP3
RABEPKENSG00000136933.12463.05440669.77890-0.532502.869601.73420HepG2FUS
RABEPKENSG00000136933.12398.86980895.14200-1.1662015.0654013.57560HepG2G3BP1
RABEPKENSG00000136933.12711.18390515.125700.465202.759702.11910HepG2GPKOW
RABEPKENSG00000136933.12708.17500934.63590-0.400303.443302.69920HepG2HNRNPL
RABEPKENSG00000136933.12377.12910544.87750-0.530905.201304.39090HepG2HNRNPU
RABEPKENSG00000136933.12442.09570853.91540-0.949703.774802.62330HepG2IGF2BP3
RABEPKENSG00000136933.12629.75450849.51430-0.431802.390201.62240HepG2LARP4
RABEPKENSG00000136933.12428.02040601.64230-0.491203.207101.98460HepG2LARP7
RABEPKENSG00000136933.12440.46630592.10810-0.426803.058502.20850HepG2MSI2
RABEPKENSG00000136933.12714.95770993.57540-0.474803.294602.60540HepG2NCBP2
RABEPKENSG00000136933.12649.069501017.47600-0.648508.613607.29370HepG2NOL12
RABEPKENSG00000136933.12586.53120435.909400.428102.470701.76270HepG2NSUN2
RABEPKENSG00000136933.12631.25770884.82200-0.487203.459002.65740HepG2PABPC4
RABEPKENSG00000136933.12329.39110539.35360-0.711408.101806.77290HepG2PARN
RABEPKENSG00000136933.12195.28750479.62720-1.2963013.9146012.30490HepG2PRPF8
RABEPKENSG00000136933.12588.64170982.81970-0.7395013.3795012.35710HepG2PTBP1
RABEPKENSG00000136933.121186.61360971.317200.288702.275501.72700HepG2PUF60
RABEPKENSG00000136933.12595.967701030.36390-0.7898011.4427010.12850HepG2PUM2
RABEPKENSG00000136933.12597.499901064.42100-0.8331013.8753012.63180HepG2QKI
RABEPKENSG00000136933.12241.37600611.72310-1.341609.982108.70300HepG2RAVER1
RABEPKENSG00000136933.12570.000701059.31890-0.8941016.1604015.11860HepG2RBM22
RABEPKENSG00000136933.12452.97240966.02940-1.0926018.7757017.12440HepG2RBM25
RABEPKENSG00000136933.12555.10430725.51460-0.386202.226301.34560HepG2RBM27
RABEPKENSG00000136933.12702.677201093.78510-0.6384010.225509.30660HepG2NELFE
RABEPKENSG00000136933.12839.259401018.71010-0.279602.502901.91350HepG2RECQL
RABEPKENSG00000136933.12550.17260700.83070-0.349202.291301.66110HepG2RPLP0
RABEPKENSG00000136933.12541.47470373.800000.534502.790001.98720HepG2RPS3A
RABEPKENSG00000136933.12496.55260683.02600-0.460002.653601.60260HepG2RPS5
RABEPKENSG00000136933.12317.74870474.43240-0.578303.577602.69860HepG2RRP9
RABEPKENSG00000136933.12772.97480486.570400.667706.134605.11770HepG2SF3B1
RABEPKENSG00000136933.12768.721701023.24470-0.412604.708203.96770HepG2SF3B4
RABEPKENSG00000136933.12334.57920680.15150-1.023502.828001.35970HepG2SFPQ
RABEPKENSG00000136933.12456.04370565.89330-0.311402.378901.77650HepG2SMN1
RABEPKENSG00000136933.12459.49430624.30860-0.442202.185101.34470HepG2SMNDC1
RABEPKENSG00000136933.12331.46070541.39930-0.707903.061602.23900HepG2SNRNP70
RABEPKENSG00000136933.12704.638601196.46510-0.7638016.0933015.14740HepG2SRFBP1
RABEPKENSG00000136933.12843.960001068.04490-0.339703.553803.03440HepG2SRSF1
RABEPKENSG00000136933.12719.55510959.10070-0.414604.362203.60820HepG2SRSF5
RABEPKENSG00000136933.12581.14490868.91050-0.580308.627407.74860HepG2SRSF9
RABEPKENSG00000136933.12226.02050325.16890-0.524702.459601.43060HepG2STIP1
RABEPKENSG00000136933.12737.032501090.70490-0.565508.610807.61450HepG2SUCLG1
RABEPKENSG00000136933.12317.42720494.00630-0.638105.758604.42740HepG2SUPT6H
RABEPKENSG00000136933.12219.49730619.12410-1.4960018.4839017.00190HepG2SUPV3L1
RABEPKENSG00000136933.12773.60410959.99750-0.311402.652802.10290HepG2TAF15
RABEPKENSG00000136933.12584.32250882.11000-0.594206.738005.43740HepG2TIA1
RABEPKENSG00000136933.12384.72850672.83940-0.806405.776404.27870HepG2XRCC6
RABEPKENSG00000136933.12385.24370552.93130-0.521305.190004.31950HepG2ZC3H8
RABEPKENSG00000136933.12510.52300713.60560-0.483205.936105.21440HepG2ZNF622
RABEPKENSG00000136933.12367.10910516.85440-0.493502.327801.79960K562AGGF1
RABEPKENSG00000136933.12384.71520537.78790-0.483202.425501.81380K562AKAP8L
RABEPKENSG00000136933.12442.55240961.45140-1.119406.660305.81340K562AQR
RABEPKENSG00000136933.12524.09080639.60760-0.287402.176301.32310K562BCLAF1
RABEPKENSG00000136933.12277.98420426.44940-0.617402.792501.91510K562BOP1
RABEPKENSG00000136933.12314.10760453.46550-0.529702.885402.08620K562CPSF6
RABEPKENSG00000136933.121089.26890692.136800.6541011.2322010.01630K562DDX47
RABEPKENSG00000136933.12337.19430526.99260-0.644204.981503.74020K562EFTUD2
RABEPKENSG00000136933.12498.74070314.401200.665603.195602.10790K562EIF3A
RABEPKENSG00000136933.12641.40060325.056200.980406.173805.00210K562EIF3G
RABEPKENSG00000136933.12326.40100461.33720-0.499202.158701.40000K562FMR1
RABEPKENSG00000136933.12709.57690350.271801.0184016.4615015.09350K562FXR1
RABEPKENSG00000136933.12316.69050432.96990-0.451202.036001.35120K562GPKOW
RABEPKENSG00000136933.12276.35790550.53160-0.994303.805302.29760K562HNRNPA2B1
RABEPKENSG00000136933.12252.02520503.62400-0.9988010.337209.24340K562HNRNPC
RABEPKENSG00000136933.12589.66350413.321600.512503.270301.91520K562HNRNPK
RABEPKENSG00000136933.12838.75520475.433600.818907.979606.26380K562HNRNPM
RABEPKENSG00000136933.121211.32070783.730100.628106.655305.43230K562HSPD1
RABEPKENSG00000136933.12608.79030435.015000.484803.735302.74910K562MAGOH
RABEPKENSG00000136933.12695.467601042.76710-0.584405.735804.11320K562MSI2
RABEPKENSG00000136933.12420.99970522.06590-0.310402.029201.33160K562MTPAP
RABEPKENSG00000136933.12294.37150602.14570-1.0325010.593608.97110K562PCBP3
RABEPKENSG00000136933.12271.07280461.87430-0.768807.112505.84060K562POLR2G
RABEPKENSG00000136933.12827.16770656.171300.334002.059401.35510K562PPIG
RABEPKENSG00000136933.12351.10930533.49910-0.603603.005402.44360K562PUS1
RABEPKENSG00000136933.12375.31980519.68100-0.469502.405601.84590K562RBM15
RABEPKENSG00000136933.12890.40790522.321100.769406.833405.53950K562RPS19
RABEPKENSG00000136933.12418.02510224.804500.894806.010804.46560K562RPS3
RABEPKENSG00000136933.12451.27990584.43980-0.373002.799901.62640K562SRSF7
RABEPKENSG00000136933.12380.69740525.73410-0.465703.445901.73590K562SRSF9
RABEPKENSG00000136933.12303.45900605.44070-0.996503.617901.90140K562SUPT6H
RABEPKENSG00000136933.12334.66920496.43710-0.568903.486002.33110K562SUPV3L1
RABEPKENSG00000136933.12715.16400463.260900.626306.683005.39740K562SYNCRIP
RABEPKENSG00000136933.12307.99750434.31420-0.495802.619601.71090K562TIAL1
RABEPKENSG00000136933.12644.04230843.12210-0.388603.788402.29260K562TROVE2
RABEPKENSG00000136933.12304.84370525.46230-0.785506.692305.02990K562UCHL5
RABEPKENSG00000136933.12484.59640615.07120-0.344002.878002.14480K562UPF1
RABEPKENSG00000136933.12349.82620540.74960-0.628302.728301.44930K562UTP18
RABEPKENSG00000136933.12352.29530526.29950-0.579104.758303.59620K562WDR3
RABEPKENSG00000136933.12715.77000547.273200.387102.986802.10740K562WDR43
RABEPKENSG00000136933.12693.710501083.30770-0.643003.171802.24000K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RABEPK is not available on ENCORE database.





25 RBPs can affect the splicing of RABEPK :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERABEPKENSG00000136933.12chr9+127975648127975801127969842127970000127982817127982979-0.171000.004650.06999excludedK562SF3B4
SERABEPKENSG00000136933.12chr9+127982817127982979127969842127970000127990188127990338-0.210000.000490.02141excludedK562PRPF8
SERABEPKENSG00000136933.12chr9+127982817127982979127975648127975801127990188127990338-0.052000.003500.05732excludedHepG2U2AF1
SERABEPKENSG00000136933.12chr9+1279756481279758011279698421279700001279828171279829790.066000.000170.00308includedHepG2U2AF2
SERABEPKENSG00000136933.12chr9+127963547127963657127963058127963185127965286127965345-0.123000.002160.02689excludedHepG2U2AF2
SERABEPKENSG00000136933.12chr9+127975648127975801127969842127970000127990188127990338-0.123000.006400.05697excludedK562AQR
SERABEPKENSG00000136933.12chr9+1279756481279758011279698421279700001279828171279829790.128000.000290.04898includedK562DROSHA
SERABEPKENSG00000136933.12chr9+1279826051279826761279756481279758011279828171279829790.090000.000010.00306includedHepG2TIA1
SERABEPKENSG00000136933.12chr9+127975648127975801127969842127970000127982817127982979-0.129000.000050.00142excludedK562PUS1
SERABEPKENSG00000136933.12chr9+1279756481279758011279698421279700001279828171279829790.128000.000870.09429includedK562LARP4
SERABEPKENSG00000136933.12chr9+127982817127982979127969842127970000127990188127990338-0.190000.001420.06620excludedK562EFTUD2
SERABEPKENSG00000136933.12chr9+127982817127982979127969842127970000127990188127990338-0.144000.001750.06344excludedHepG2MATR3
SERABEPKENSG00000136933.12chr9+127982817127982979127969842127970000127990188127990338-0.186000.000150.01840excludedHepG2DDX6
SERABEPKENSG00000136933.12chr9+1279756481279758011279698421279700001279828171279829790.153000.000100.01328includedK562HNRNPUL1
SERABEPKENSG00000136933.12chr9+127963547127963657127963058127963185127965286127965345-0.105000.000270.03805excludedHepG2RBFOX2
SERABEPKENSG00000136933.12chr9+127975648127975801127969842127970000127982817127982979-0.163000.000030.00712excludedHepG2TAF15
SERABEPKENSG00000136933.12chr9+127975648127975801127969842127970000127982817127982979-0.105000.001420.03656excludedK562AGGF1
SERABEPKENSG00000136933.12chr9+1279826051279826761279756481279758011279828171279829790.078000.002080.07792includedK562HNRNPK
SERABEPKENSG00000136933.12chr9+1279828171279829791279698421279700001279901881279903380.223000.000040.00456includedHepG2SRSF9
SERABEPKENSG00000136933.12chr9+127975648127975801127969842127970000127982817127982979-0.173000.002020.06787excludedK562PTBP1
A3SSRABEPKENSG00000136933.12chr9+1279652641279653751279652861279653751279628811279631850.075000.000310.00243longerK562AQR
MXERABEPKENSG00000136933.12chr9+1279756481279758011279828171279829791279698421279700001279901881279903380.171000.001100.066001includedK562LARP4
MXERABEPKENSG00000136933.12chr9+1279698421279700001279826051279826761279652861279653451279828171279829790.173000.000030.001051includedHepG2U2AF1
MXERABEPKENSG00000136933.12chr9+1279756481279758011279828241279829791279652861279653451279901881279903380.108000.002180.038871includedHepG2U2AF1
MXERABEPKENSG00000136933.12chr9+1279756481279758011279828171279829791279652861279653451279901881279903380.107000.002710.045801includedHepG2U2AF1
MXERABEPKENSG00000136933.12chr9+1279756481279758011279828171279829791279698421279700001279901881279903380.155000.008540.078641includedK562DROSHA
MXERABEPKENSG00000136933.12chr9+1279756481279758011279828171279829791279652861279653451279901881279903380.071000.007490.050061includedK562AQR
MXERABEPKENSG00000136933.12chr9+1279698131279700001279828171279829791279652861279653451279901881279903380.072000.017740.099901includedK562AQR
MXERABEPKENSG00000136933.12chr9+127969842127970000127975648127975801127965286127965345127982817127982979-0.141000.010410.065422includedK562AQR
MXERABEPKENSG00000136933.12chr9+127982817127982979127990188127990338127975648127975801127994874127995024-0.165000.003160.074332includedK562EFTUD2
MXERABEPKENSG00000136933.12chr9+1279828171279829791279901881279903381279756481279758011279948741279950240.190000.000050.003521includedHepG2XRN2
MXERABEPKENSG00000136933.12chr9+127969842127970000127975648127975801127965286127965345127982817127982979-0.172000.000750.027112includedHepG2XRN2
MXERABEPKENSG00000136933.12chr9+127969842127970000127982817127982979127965286127965345127990188127990338-0.140000.001650.045952includedHepG2XRN2
MXERABEPKENSG00000136933.12chr9+127969842127970000127975648127975801127965286127965345127982817127982979-0.191000.001570.036362includedHepG2DDX55
MXERABEPKENSG00000136933.12chr9+127969842127970000127982824127982979127965286127965345127990188127990338-0.171000.001340.039752includedK562SBDS
MXERABEPKENSG00000136933.12chr9+127969842127970000127982817127982979127965286127965345127990188127990338-0.166000.001570.043232includedK562SBDS
MXERABEPKENSG00000136933.12chr9+127969842127970000127982824127982979127965286127965345127990188127990338-0.246000.000010.000822includedK562PPIL4
MXERABEPKENSG00000136933.12chr9+127969842127970000127982817127982979127965286127965345127990188127990338-0.241000.000010.000832includedK562PPIL4
MXERABEPKENSG00000136933.12chr9+127982817127982979127990188127990338127975648127975801127994874127995024-0.130000.001140.083212includedHepG2SSB
MXERABEPKENSG00000136933.12chr9+127975648127975801127982817127982979127965286127965345127990188127990338-0.141000.001010.086212includedHepG2XRCC6
MXERABEPKENSG00000136933.12chr9+1279756481279758011279828171279829791279698421279700001279901881279903380.213000.000030.001921includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RABEPK is not avaliable on ENCORE database.