C5orf28

General Information

Gene Name : C5orf28
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: C5orf28)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for C5orf28 is not avaliable on ENCORE database.

Proteins bound to RNA

C5orf28 RNA is bound by 5 proteins.

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eCLIP assay for C5orf28 is not avaliable on ENCORE database.

5 proteins are bound to C5orf28 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	43479907	43479970	-	intron-Distal,intron-Proximal	3.75259	8.36747	K562	TIA1
chr5	43483782	43483915	-	intron-Distal	3.42160	4.54482	K562	DDX42
chr5	43479637	43479707	-	intron-Distal	4.27853	4.07352	K562	KHSRP
chr5	43462874	43462948	-	intron-Distal	4.11821	3.59917	K562	EXOSC5
chr5	43454208	43454305	-	intron-Distal,intron-Proximal	3.79372	3.26999	K562	KHSRP
chr5	43483822	43483903	-	intron-Distal	3.26357	3.04054	K562	GTF2F1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 6 of 6 entries

eCLIP assay for C5orf28 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for C5orf28 is not available on ENCORE database.
36 RBPs can affect the levels of C5orf28.

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The Knockdown/knockout RNA-Seq assay for C5orf28 is not available on ENCORE database.

36 RBPs can affect the gene expression of C5orf28 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
C5orf28	ENSG00000151881.10	552.94210	281.31640	0.97480	12.91130	11.77110	HepG2	ETF1
C5orf28	ENSG00000151881.10	519.98400	233.81320	1.15300	10.78680	9.62890	HepG2	DDX3X
C5orf28	ENSG00000151881.10	303.68570	489.81910	-0.68970	6.42210	5.54480	K562	RBM15
C5orf28	ENSG00000151881.10	303.42650	506.89680	-0.74030	6.53300	5.49670	K562	AKAP8L
C5orf28	ENSG00000151881.10	312.98120	502.77960	-0.68390	5.40750	4.68080	K562	PUS1
C5orf28	ENSG00000151881.10	253.27590	407.44270	-0.68590	5.79380	4.65680	K562	EIF3G
C5orf28	ENSG00000151881.10	73.23310	161.91560	-1.14470	4.83200	3.88330	HepG2	XRN2
C5orf28	ENSG00000151881.10	365.89380	235.13090	0.63790	4.44190	3.82570	HepG2	RBM22
C5orf28	ENSG00000151881.10	288.08480	187.19430	0.62190	3.61400	3.09100	HepG2	SRSF1
C5orf28	ENSG00000151881.10	455.39090	288.03600	0.66080	3.90910	3.03370	K562	G3BP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 39 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for C5orf28 is not available on ENCORE database.

7 RBPs can affect the splicing of C5orf28 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	C5orf28	ENSG00000151881.10	chr5	-	43479991	43480089	43453759	43454145	43483923	43483959	0.20700	0.00000	0.00467	included	K562	PUM1
SE	C5orf28	ENSG00000151881.10	chr5	-	43453759	43454145	43446443	43446659	43483923	43483987	-0.21500	0.00002	0.00059	excluded	K562	PUS1
SE	C5orf28	ENSG00000151881.10	chr5	-	43479991	43480089	43453759	43454145	43483923	43483959	0.67100	0.00006	0.04854	included	HepG2	NKRF
SE	C5orf28	ENSG00000151881.10	chr5	-	43479991	43480089	43453759	43454145	43483923	43483959	-0.40600	0.00060	0.09719	excluded	K562	SBDS
SE	C5orf28	ENSG00000151881.10	chr5	-	43454556	43454707	43453759	43454145	43483923	43483993	0.12400	0.00195	0.03890	included	K562	U2AF1
SE	C5orf28	ENSG00000151881.10	chr5	-	43453759	43454145	43446443	43446659	43483923	43483987	-0.10400	0.00248	0.05539	excluded	K562	AGGF1
SE	C5orf28	ENSG00000151881.10	chr5	-	43479991	43480089	43453759	43454145	43483923	43483959	0.29400	0.00298	0.09439	included	HepG2	MATR3
SE	C5orf28	ENSG00000151881.10	chr5	-	43479991	43480089	43453759	43454145	43483923	43483959	0.40000	0.00617	0.08916	included	HepG2	U2AF1

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

C5orf28

General Information

Functions

Localization

Domains (AlphaFold: C5orf28)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for C5orf28 is not avaliable on ENCORE database.

5 proteins are bound to C5orf28 RNA:

eCLIP assay for C5orf28 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for C5orf28 is not available on ENCORE database.

36 RBPs can affect the gene expression of C5orf28 :

The Knockdown/knockout RNA-Seq assay for C5orf28 is not available on ENCORE database.

7 RBPs can affect the splicing of C5orf28 :

The Knockdown/knockout RNA-Seq assay for C5orf28 is not avaliable on ENCORE database.