C11orf1

General Information

Gene Name : C11orf1
Gene ID : ENSG00000137720.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: C11orf1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	C11orf1	ENSG00000137720.7	67.90	57.42	62.66	ENCSR000AEF
HepG2	C11orf1	ENSG00000137720.7	31.20	32.59	31.90	ENCSR985KAT
K562	C11orf1	ENSG00000137720.7	42.16	43.58	42.87	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for C11orf1 is not avaliable on ENCORE database.

Proteins bound to RNA

C11orf1 RNA is bound by 1 proteins.

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eCLIP assay for C11orf1 is not avaliable on ENCORE database.

1 proteins are bound to C11orf1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	111753133	111753206	+	3'-UTR,CDS	3.05082	5.54400	K562	YBX3
chr11	111753206	111753275	+	CDS	3.10029	3.87559	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 2 of 2 entries

eCLIP assay for C11orf1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for C11orf1 is not available on ENCORE database.
51 RBPs can affect the levels of C11orf1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for C11orf1 is not available on ENCORE database.

51 RBPs can affect the gene expression of C11orf1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
C11orf1	ENSG00000137720.3	77.70030	231.12490	-1.57270	12.58510	11.21120	HepG2	RBM25
C11orf1	ENSG00000137720.3	485.21990	270.62790	0.84220	9.04230	7.58420	K562	U2AF2
C11orf1	ENSG00000137720.3	185.11240	350.51120	-0.92110	7.09190	6.17870	K562	HNRNPC
C11orf1	ENSG00000137720.3	308.40100	171.38790	0.84740	6.49870	5.79190	HepG2	TIAL1
C11orf1	ENSG00000137720.3	461.91010	257.97680	0.84030	5.52880	4.80750	HepG2	AKAP1
C11orf1	ENSG00000137720.3	131.61850	224.89760	-0.77290	4.69300	3.91430	HepG2	SRSF5
C11orf1	ENSG00000137720.3	77.28340	181.00120	-1.22780	4.72370	3.81570	HepG2	RAVER1
C11orf1	ENSG00000137720.3	150.04090	254.66460	-0.76320	4.45030	3.68450	HepG2	QKI
C11orf1	ENSG00000137720.3	745.90810	508.74040	0.55200	4.61630	3.59420	K562	HSPD1
C11orf1	ENSG00000137720.3	356.79300	227.79390	0.64730	3.99160	3.29070	HepG2	PUF60
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 52 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for C11orf1 is not available on ENCORE database.

10 RBPs can affect the splicing of C11orf1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	C11orf1	ENSG00000137720.3	chr11	+	111753859	111753926	111753091	111753322	111754494	111756699	-0.25400	0.00000	0.00002	excluded	HepG2	SRSF7
SE	C11orf1	ENSG00000137720.3	chr11	+	111753859	111753926	111753091	111753322	111754494	111756699	-0.21300	0.00000	0.00001	excluded	K562	U2AF1
SE	C11orf1	ENSG00000137720.3	chr11	+	111753859	111753926	111753091	111753322	111754494	111756699	0.17300	0.00000	0.00004	included	HepG2	HNRNPL
SE	C11orf1	ENSG00000137720.3	chr11	+	111753859	111753926	111753091	111753322	111754494	111756699	0.05500	0.00000	0.00052	included	K562	HNRNPL
SE	C11orf1	ENSG00000137720.3	chr11	+	111753859	111753926	111753091	111753322	111754494	111756699	-0.23800	0.00000	0.00000	excluded	K562	U2AF2
SE	C11orf1	ENSG00000137720.3	chr11	+	111753859	111753926	111753091	111753322	111754494	111756699	-0.28700	0.00001	0.00015	excluded	HepG2	U2AF2
SE	C11orf1	ENSG00000137720.3	chr11	+	111753859	111753926	111753091	111753322	111754494	111756699	-0.12400	0.00004	0.01027	excluded	K562	SRSF7
SE	C11orf1	ENSG00000137720.3	chr11	+	111752208	111752339	111750284	111750329	111753091	111753322	-0.05700	0.00009	0.00946	excluded	HepG2	AKAP1
SE	C11orf1	ENSG00000137720.3	chr11	+	111752208	111752339	111750284	111750329	111753091	111753322	-0.06500	0.00029	0.00963	excluded	HepG2	HNRNPK
SE	C11orf1	ENSG00000137720.3	chr11	+	111753859	111753926	111753091	111753322	111754494	111756699	-0.09000	0.00035	0.00500	excluded	K562	AQR

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

C11orf1

General Information

Functions

Localization

Domains (AlphaFold: C11orf1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for C11orf1 is not avaliable on ENCORE database.

1 proteins are bound to C11orf1 RNA:

eCLIP assay for C11orf1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for C11orf1 is not available on ENCORE database.

51 RBPs can affect the gene expression of C11orf1 :

The Knockdown/knockout RNA-Seq assay for C11orf1 is not available on ENCORE database.

10 RBPs can affect the splicing of C11orf1 :

The Knockdown/knockout RNA-Seq assay for C11orf1 is not avaliable on ENCORE database.