BOD1

General Information

Gene Name : BOD1
Gene ID : ENSG00000145919.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: BOD1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	BOD1	ENSG00000145919.10	24.11	19.53	21.82	ENCSR000AEF
HepG2	BOD1	ENSG00000145919.10	83.34	92.68	88.01	ENCSR985KAT
K562	BOD1	ENSG00000145919.10	15.87	16.55	16.21	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for BOD1 is not avaliable on ENCORE database.

Proteins bound to RNA

BOD1 RNA is bound by 7 proteins.

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eCLIP assay for BOD1 is not avaliable on ENCORE database.

7 proteins are bound to BOD1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	173043384	173043457	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.14427	9.88902	HepG2	DDX3X
chr5	173043292	173043384	-	CDS,intron-Distal,intron-Proximal	5.12259	8.90399	HepG2	DDX3X
chr5	173043534	173043612	-	5'-UTR,intron-Distal,intron-Proximal	4.94148	5.35746	HepG2	DDX3X
chr5	173041325	173041404	-	intron-Distal	4.39745	5.02084	HepG2	HNRNPM
chr5	173037601	173037659	-	intron-Distal	3.66703	4.94813	HepG2	HNRNPM
chr5	173035048	173035149	-	3'-UTR,intron-Distal,intron-Proximal	4.48401	4.49605	HepG2	UPF1
chr5	173040134	173040214	-	5'-UTR,CDS,intron-Distal	3.35155	3.60157	HepG2	GRWD1
chr5	173039428	173039533	-	intron-Distal	3.10724	3.54222	HepG2	TAF15
chr5	173043161	173043246	-	CDS,intron-Distal	3.33759	3.34231	K562	RBM15
chr5	173043346	173043407	-	CDS,intron-Distal,intron-Proximal	3.93616	3.18217	HepG2	NKRF
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 10 entries

eCLIP assay for BOD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for BOD1 is not available on ENCORE database.
105 RBPs can affect the levels of BOD1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for BOD1 is not available on ENCORE database.

105 RBPs can affect the gene expression of BOD1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
BOD1	ENSG00000145919.6	740.61720	1924.68760	-1.37780	58.50990	56.96840	HepG2	SRSF1
BOD1	ENSG00000145919.6	601.54010	2120.69720	-1.81780	45.17540	42.93360	HepG2	DDX3X
BOD1	ENSG00000145919.6	730.72430	2010.50570	-1.46020	29.16240	27.26890	HepG2	NCBP2
BOD1	ENSG00000145919.6	654.10630	1811.39470	-1.46950	28.38420	26.33570	HepG2	G3BP1
BOD1	ENSG00000145919.6	472.08600	1232.90370	-1.38490	27.15330	25.12260	HepG2	U2AF1
BOD1	ENSG00000145919.6	357.47450	1097.32710	-1.61810	25.08070	21.02500	HepG2	HNRNPAB
BOD1	ENSG00000145919.6	1136.89610	1971.05290	-0.79390	21.45030	20.22430	HepG2	NELFE
BOD1	ENSG00000145919.6	244.99320	703.60690	-1.52200	21.84060	19.89840	HepG2	PRPF8
BOD1	ENSG00000145919.6	744.32970	1596.06170	-1.10050	20.35160	18.30790	HepG2	EIF4G2
BOD1	ENSG00000145919.6	897.03760	1740.85480	-0.95660	19.73490	18.04330	HepG2	RBM25
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 120 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for BOD1 is not available on ENCORE database.

19 RBPs can affect the splicing of BOD1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	BOD1	ENSG00000145919.6	chr5	-	173040133	173040258	173036359	173036437	173043202	173043662	-0.24400	0.00000	0.00017	excluded	K562	AKAP8L
SE	BOD1	ENSG00000145919.6	chr5	-	173040133	173040258	173036359	173036437	173043202	173043662	-0.13300	0.00000	0.00001	excluded	HepG2	U2AF2
SE	BOD1	ENSG00000145919.6	chr5	-	173040133	173040258	173036359	173036437	173043202	173043662	-0.41300	0.00000	0.00000	excluded	K562	PUS1
SE	BOD1	ENSG00000145919.6	chr5	-	173036580	173036673	173036359	173036437	173040133	173040258	0.11700	0.00000	0.00000	included	HepG2	BCCIP
SE	BOD1	ENSG00000145919.6	chr5	-	173036580	173036673	173036359	173036437	173040133	173040258	0.07900	0.00000	0.00214	included	HepG2	DDX55
SE	BOD1	ENSG00000145919.6	chr5	-	173040133	173040258	173036359	173036437	173043202	173043662	-0.08300	0.00004	0.00118	excluded	HepG2	U2AF1
SE	BOD1	ENSG00000145919.6	chr5	-	173036240	173036437	173034801	173035295	173043202	173043361	-0.06700	0.00006	0.02465	excluded	HepG2	NOL12
SE	BOD1	ENSG00000145919.6	chr5	-	173036580	173036673	173036359	173036437	173040133	173040258	0.11100	0.00007	0.02116	included	HepG2	UCHL5
SE	BOD1	ENSG00000145919.6	chr5	-	173036580	173036673	173036359	173036437	173040133	173040258	0.18500	0.00008	0.00508	included	K562	TARDBP
SE	BOD1	ENSG00000145919.6	chr5	-	173036240	173036437	173034801	173035295	173040133	173040258	0.05500	0.00010	0.00810	included	HepG2	SFPQ

Showing 1 to 10 of 22 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

BOD1

General Information

Functions

Localization

Domains (AlphaFold: BOD1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for BOD1 is not avaliable on ENCORE database.

7 proteins are bound to BOD1 RNA:

eCLIP assay for BOD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for BOD1 is not available on ENCORE database.

105 RBPs can affect the gene expression of BOD1 :

The Knockdown/knockout RNA-Seq assay for BOD1 is not available on ENCORE database.

19 RBPs can affect the splicing of BOD1 :

The Knockdown/knockout RNA-Seq assay for BOD1 is not avaliable on ENCORE database.