ZNF280C

General Information

Gene Name       : ZNF280C
Gene ID             : ENSG00000056277.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF280C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF280CENSG00000056277.154.383.744.06ENCSR000AEF
HepG2ZNF280CENSG00000056277.151.342.351.85ENCSR985KAT
K562ZNF280CENSG00000056277.152.332.982.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF280C is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF280C RNA is bound by 5 proteins.  







eCLIP assay for ZNF280C is not avaliable on ENCORE database.





5 proteins are bound to ZNF280C RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX129336932129337058-3'-UTR,intron-Distal4.038103.59673K562HNRNPL
chrX129345523129345636-intron-Distal4.209553.90241K562MATR3
chrX129399962129400035-intron-Distal4.483964.27402K562CSTF2T
chrX129346289129346399-intron-Distal4.142623.78533HepG2PTBP1
chrX129370674129370858-intron-Distal,intron-Proximal3.778043.45805K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF280C is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF280C is not available on ENCORE database.

  • 37 RBPs can affect the levels of ZNF280C.  








The Knockdown/knockout RNA-Seq assay for ZNF280C is not available on ENCORE database.





37 RBPs can affect the gene expression of ZNF280C :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF280CENSG00000056277.11170.63820233.69840-0.453702.127701.51180HepG2AUH
ZNF280CENSG00000056277.11130.29030190.94130-0.551402.360601.66770HepG2DAZAP1
ZNF280CENSG00000056277.11292.41370127.625801.196006.933105.87490HepG2EIF4B
ZNF280CENSG00000056277.11111.80620180.46990-0.690802.691401.88780HepG2EIF4G2
ZNF280CENSG00000056277.11290.94550187.210200.636002.520101.78180HepG2FIP1L1
ZNF280CENSG00000056277.11132.51960188.44330-0.507902.107701.47530HepG2HNRNPF
ZNF280CENSG00000056277.11115.88830185.56350-0.679203.112602.34810HepG2IGF2BP1
ZNF280CENSG00000056277.11189.41350128.020000.565102.134901.57440HepG2QKI
ZNF280CENSG00000056277.11186.53340131.542300.503801.825401.36630HepG2NELFE
ZNF280CENSG00000056277.11129.41980202.98930-0.649302.816202.12800HepG2RPLP0
ZNF280CENSG00000056277.11185.64380123.065900.593002.343201.79320HepG2SF3B4
ZNF280CENSG00000056277.11229.11900128.449000.834804.659104.08540HepG2SRSF1
ZNF280CENSG00000056277.11118.94490185.13690-0.638302.848902.14310HepG2SRSF7
ZNF280CENSG00000056277.11153.19680104.495600.551802.105401.61050HepG2SRSF9
ZNF280CENSG00000056277.11169.19750115.440600.551502.006201.51570HepG2TAF15
ZNF280CENSG00000056277.1198.00290140.87820-0.523601.810401.33500HepG2TRIM56
ZNF280CENSG00000056277.11536.27390414.739600.370702.466301.92520K562AGGF1
ZNF280CENSG00000056277.11342.97900495.66640-0.531204.274902.76810K562CCDC124
ZNF280CENSG00000056277.11401.02040285.977300.487702.884302.08550K562CPSF6
ZNF280CENSG00000056277.11137.06690196.56200-0.520102.019301.33060K562EIF3G
ZNF280CENSG00000056277.11183.20730295.99400-0.692104.152503.10060K562FIP1L1
ZNF280CENSG00000056277.11308.53570201.531700.614302.481601.42280K562FKBP4
ZNF280CENSG00000056277.11152.21850225.71580-0.568402.690002.09240K562FXR1
ZNF280CENSG00000056277.11405.41330243.148400.737504.317103.39020K562G3BP2
ZNF280CENSG00000056277.11579.00300341.177900.762902.979901.70200K562HNRNPA2B1
ZNF280CENSG00000056277.11150.81450243.43670-0.690803.165902.16470K562HNRNPM
ZNF280CENSG00000056277.11355.86530233.155400.609902.811301.86920K562KRR1
ZNF280CENSG00000056277.11378.86860294.518700.363202.196401.52410K562NSUN2
ZNF280CENSG00000056277.11222.12490335.97910-0.597003.011902.15250K562PPIG
ZNF280CENSG00000056277.11150.33160255.23840-0.763704.990604.12260K562PTBP1
ZNF280CENSG00000056277.11676.33850471.873700.519204.059902.74690K562PUM1
ZNF280CENSG00000056277.11228.82710393.85130-0.783404.729103.37220K562RPS3
ZNF280CENSG00000056277.11535.40960272.759300.972902.831501.60940K562SF1
ZNF280CENSG00000056277.11411.24780259.691700.663103.824102.67000K562SF3B1
ZNF280CENSG00000056277.11240.33430141.626700.762803.554302.38840K562SUPV3L1
ZNF280CENSG00000056277.11123.48870253.23160-1.036107.098505.91120K562TARDBP
ZNF280CENSG00000056277.11410.35680243.270900.754206.602605.36970K562U2AF2
ZNF280CENSG00000056277.11675.78700368.687300.874103.593701.68050K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF280C is not available on ENCORE database.





2 RBPs can affect the splicing of ZNF280C :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF280CENSG00000056277.11chrX-129361655129361756129354322129354454129362950129363108-0.262000.004780.06018excludedK562PUS1
A3SSZNF280CENSG00000056277.11chrX-1293808321293810321293808321293809791293943921293944390.202000.011080.05770longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF280C is not avaliable on ENCORE database.