ZNF239

General Information

Gene Name       : ZNF239
Gene ID             : ENSG00000196793.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF239)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF239ENSG00000196793.130.620.500.56ENCSR000AEF
HepG2ZNF239ENSG00000196793.130.100.000.05ENCSR985KAT
K562ZNF239ENSG00000196793.1315.8615.8715.86ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF239 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on ZNF239 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for ZNF239 is not avaliable on ENCORE database.






NO known proteins are bound to ZNF239 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for ZNF239 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF239 is not available on ENCORE database.

  • 50 RBPs can affect the levels of ZNF239.  








The Knockdown/knockout RNA-Seq assay for ZNF239 is not available on ENCORE database.





50 RBPs can affect the gene expression of ZNF239 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF239ENSG00000196793.9351.84150232.557000.597203.578602.21760K562AARS
ZNF239ENSG00000196793.9142.24890313.87450-1.141803.253402.64750K562AGGF1
ZNF239ENSG00000196793.9166.14050344.81350-1.053402.636601.68390K562AKAP8
ZNF239ENSG00000196793.9137.23640326.57920-1.250803.082702.39230K562AKAP8L
ZNF239ENSG00000196793.91061.98840703.202300.594703.280901.92830K562APOBEC3C
ZNF239ENSG00000196793.91200.87400614.304600.9670023.4201021.71120K562DDX47
ZNF239ENSG00000196793.9477.88500658.39720-0.462302.114101.47140K562EIF2S2
ZNF239ENSG00000196793.9360.07780164.876201.126805.026003.63080K562EIF3A
ZNF239ENSG00000196793.9461.16170271.823500.762507.184005.91310K562EIF3G
ZNF239ENSG00000196793.9274.73310113.661401.2732010.471208.85600K562EIF4A3
ZNF239ENSG00000196793.9369.47740637.54470-0.787008.011206.49130K562FIP1L1
ZNF239ENSG00000196793.9256.99830417.34200-0.699504.940203.78920K562FMR1
ZNF239ENSG00000196793.9357.49120118.200801.5966019.6168018.11840K562FXR1
ZNF239ENSG00000196793.9135.46390207.91670-0.618102.869201.40640K562G3BP1
ZNF239ENSG00000196793.9272.41020391.63020-0.523703.028402.19840K562GPKOW
ZNF239ENSG00000196793.9135.67700254.66310-0.908403.860001.54310K562HLTF
ZNF239ENSG00000196793.989.57420335.82720-1.906609.892007.08910K562HNRNPA2B1
ZNF239ENSG00000196793.9932.92530524.363700.831108.494206.71330K562HNRNPM
ZNF239ENSG00000196793.9159.25010361.68080-1.183404.204201.53000K562HNRNPUL1
ZNF239ENSG00000196793.9122.71550217.46740-0.825503.864802.56980K562IGF2BP2
ZNF239ENSG00000196793.9132.30150346.65730-1.389702.353901.60140K562KIF1C
ZNF239ENSG00000196793.9446.87260228.555400.967206.700005.36580K562MAGOH
ZNF239ENSG00000196793.9436.28410228.092600.935509.628107.80240K562MATR3
ZNF239ENSG00000196793.9282.09190382.27280-0.438402.261401.47110K562METAP2
ZNF239ENSG00000196793.9101.54670272.18690-1.422503.896802.80000K562NAA15
ZNF239ENSG00000196793.9355.94760490.08630-0.461403.998703.12040K562NSUN2
ZNF239ENSG00000196793.990.40940293.92090-1.700908.112306.10020K562PABPN1
ZNF239ENSG00000196793.9151.60550223.40960-0.559402.692001.36250K562PCBP1
ZNF239ENSG00000196793.9546.01990723.70190-0.406402.788401.96350K562PPIG
ZNF239ENSG00000196793.9165.56950349.60360-1.078304.327202.34790K562PPP1R8
ZNF239ENSG00000196793.950.40030324.03030-2.684608.454107.55260K562PUS1
ZNF239ENSG00000196793.991.08490315.59160-1.792805.010104.23360K562RBM15
ZNF239ENSG00000196793.970.19040148.59190-1.082005.194203.28510K562RBM25
ZNF239ENSG00000196793.9310.92340224.071700.472502.306401.32820K562NELFE
ZNF239ENSG00000196793.9529.75750352.261400.588603.646102.70560K562RPS19
ZNF239ENSG00000196793.9703.92490464.868400.598503.037701.37330K562RPS3A
ZNF239ENSG00000196793.9259.06330137.731100.911402.827701.81370K562RPS3
ZNF239ENSG00000196793.9483.48810289.149700.741606.373104.73650K562SAFB
ZNF239ENSG00000196793.9105.67430268.89440-1.347405.096303.30290K562SF1
ZNF239ENSG00000196793.9262.87960162.873500.690504.492403.39320K562SF3B4
ZNF239ENSG00000196793.9117.18920308.65910-1.397206.216604.12940K562SNRNP200
ZNF239ENSG00000196793.9152.19610369.30710-1.278903.383801.75160K562SUPT6H
ZNF239ENSG00000196793.9744.01550325.526701.1925020.4034018.27350K562SYNCRIP
ZNF239ENSG00000196793.9437.01610618.13430-0.500204.676003.02050K562TROVE2
ZNF239ENSG00000196793.9239.87400151.860500.659403.098201.93080K562U2AF1
ZNF239ENSG00000196793.9346.00620156.782101.141904.744603.69720K562U2AF2
ZNF239ENSG00000196793.9233.57850354.37940-0.601403.284802.17180K562UCHL5
ZNF239ENSG00000196793.9391.64310519.64670-0.408003.308602.52680K562UPF1
ZNF239ENSG00000196793.9294.24560444.64880-0.595602.060801.30670K562WDR3
ZNF239ENSG00000196793.9632.22300462.359100.451304.551003.48470K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF239 is not available on ENCORE database.





1 RBPs can affect the splicing of ZNF239 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF239ENSG00000196793.9chr10-440633464406346944051791440536194406998744070066-0.311000.001030.06496excludedK562HNRNPL

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF239 is not avaliable on ENCORE database.