VPS54

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VPS54	ENSG00000143952.19	11.08	8.61	9.84	ENCSR000AEF
HepG2	VPS54	ENSG00000143952.19	26.60	49.04	37.82	ENCSR985KAT
K562	VPS54	ENSG00000143952.19	9.94	10.49	10.21	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VPS54 is not avaliable on ENCORE database.

Proteins bound to RNA

VPS54 RNA is bound by 31 proteins.

eCLIP assay for VPS54 is not avaliable on ENCORE database.

31 proteins are bound to VPS54 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	64120413	64120440	-	3'-UTR,intron-Distal	3.92791	14.45566	HepG2	BCLAF1
chr2	64126683	64126726	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.07477	6.65791	HepG2	BUD13
chr2	64120104	64120137	-	3'-UTR,intron-Distal,intron-Proximal	3.82922	3.08510	HepG2	ZC3H11A
chr2	64120271	64120333	-	3'-UTR,intron-Distal	4.47683	4.38976	HepG2	ZC3H11A
chr2	64140379	64140426	-	5'-UTR,CDS,intron-Distal	3.08353	5.87166	HepG2	GRWD1
chr2	64246028	64246094	-	5'-UTR,intron-Distal	3.16883	7.44670	HepG2	PRPF8
chr2	64144051	64144141	-	CDS,intron-Distal,intron-Proximal	4.17205	4.72775	HepG2	U2AF1
chr2	64171734	64171747	-	CDS,intron-Distal	3.99255	16.09505	HepG2	BCLAF1
chr2	64174594	64174632	-	CDS,intron-Distal,intron-Proximal	3.75122	6.98930	HepG2	U2AF2
chr2	64169621	64169639	-	CDS,intron-Distal	4.02242	21.94873	HepG2	BCLAF1
chr2	64147024	64147125	-	CDS,intron-Distal,intron-Proximal	3.02933	9.60267	HepG2	GRWD1
chr2	64147580	64147603	-	CDS,intron-Distal	3.39869	3.86355	HepG2	PPIG
chr2	64160777	64160831	-	CDS,intron-Distal,intron-Proximal	4.37823	5.05356	HepG2	PRPF8
chr2	64160971	64160992	-	CDS,intron-Distal	3.84230	11.10779	HepG2	BCLAF1
chr2	64189304	64189418	-	CDS,intron-Distal	3.64321	5.12379	HepG2	RBM15
chr2	64196096	64196125	-	CDS,intron-Distal	3.38120	4.99842	HepG2	PPIG
chr2	64144045	64144148	-	CDS,intron-Distal,intron-Proximal	4.09937	15.38035	HepG2	AQR
chr2	64144004	64144112	-	CDS,intron-Distal,intron-Proximal	3.71123	10.86331	HepG2	PRPF8
chr2	64169682	64169694	-	CDS,intron-Distal	3.60080	10.92438	HepG2	BCLAF1
chr2	64169598	64169605	-	CDS,intron-Distal,intron-Proximal	3.28251	9.90229	HepG2	BCLAF1
chr2	64144052	64144154	-	CDS,intron-Distal,intron-Proximal	3.48716	17.27163	HepG2	U2AF2
chr2	64141334	64141367	-	CDS,intron-Distal	3.13245	3.80065	HepG2	PPIG
chr2	64160796	64160839	-	CDS,intron-Distal,intron-Proximal	3.33464	6.58818	HepG2	PPIG
chr2	64147662	64147688	-	CDS,intron-Distal	3.42857	13.90696	HepG2	BCLAF1
chr2	64189153	64189223	-	CDS,intron-Distal,intron-Proximal	4.92189	20.15752	HepG2	PRPF8
chr2	64199300	64199346	-	CDS,intron-Distal	3.70592	9.04641	HepG2	PPIG
chr2	64169639	64169669	-	CDS,intron-Distal	4.40944	23.30628	HepG2	BCLAF1
chr2	64171747	64171773	-	CDS,intron-Distal	3.44307	15.79740	HepG2	BCLAF1
chr2	64196092	64196125	-	CDS,intron-Distal	3.61979	25.48604	HepG2	BCLAF1
chr2	64169605	64169621	-	CDS,intron-Distal	3.37708	14.05479	HepG2	BCLAF1
chr2	64147031	64147066	-	CDS,intron-Distal,intron-Proximal	3.39864	12.94085	HepG2	BCLAF1
chr2	64147586	64147605	-	CDS,intron-Distal	4.92036	14.65888	HepG2	BCLAF1
chr2	64141355	64141374	-	CDS,intron-Distal	3.32866	11.71420	HepG2	BCLAF1
chr2	64161088	64161125	-	CDS,intron-Distal	3.50737	18.76950	HepG2	BCLAF1
chr2	64148357	64148390	-	CDS,intron-Distal	4.24336	16.23904	HepG2	BCLAF1
chr2	64160949	64161001	-	CDS,intron-Distal	4.51114	5.19012	HepG2	LIN28B
chr2	64161086	64161114	-	CDS,intron-Distal	4.74383	6.26288	K562	YBX3
chr2	64161114	64161135	-	CDS,intron-Distal	3.16135	4.91034	K562	YBX3
chr2	64176257	64176308	-	CDS,intron-Distal,intron-Proximal	3.77493	8.36543	HepG2	U2AF2
chr2	64141291	64141344	-	CDS,intron-Distal,intron-Proximal	5.75324	7.70650	HepG2	PRPF8
chr2	64193061	64193081	-	CDS,intron-Distal	3.52518	13.26331	HepG2	BCLAF1
chr2	64199299	64199349	-	CDS,intron-Distal,intron-Proximal	3.58287	31.38634	HepG2	BCLAF1
chr2	64144004	64144045	-	CDS,intron-Distal,intron-Proximal	4.57499	3.59236	HepG2	AQR
chr2	64144063	64144159	-	CDS,intron-Distal,intron-Proximal	3.14261	4.60947	K562	AQR
chr2	64160967	64161004	-	CDS,intron-Distal	3.21741	5.80517	HepG2	GRWD1
chr2	64148462	64148468	-	CDS,intron-Distal	3.24172	9.93919	HepG2	BCLAF1
chr2	64208973	64209002	-	CDS,intron-Distal,intron-Proximal	3.10561	4.18806	HepG2	U2AF2
chr2	64160950	64161058	-	CDS,intron-Distal	3.85199	3.04123	K562	LIN28B
chr2	64208781	64208841	-	CDS,intron-Distal	3.16715	4.33023	K562	ZNF622
chr2	64147089	64147157	-	CDS,intron-Distal,intron-Proximal	3.87807	11.22616	HepG2	U2AF2
chr2	64156883	64156949	-	intron-Distal	4.03948	5.28137	HepG2	MATR3
chr2	64142673	64142727	-	intron-Distal	3.17412	8.97985	HepG2	SUGP2
chr2	64167682	64167708	-	intron-Distal	4.70656	5.78279	HepG2	ILF3
chr2	64165091	64165145	-	intron-Distal	3.58268	3.64175	HepG2	AGGF1
chr2	64148215	64148295	-	intron-Distal,intron-Proximal	3.02343	3.51696	K562	KHSRP
chr2	64228079	64228162	-	intron-Distal	4.08022	3.10466	K562	SAFB2
chr2	64167794	64167841	-	intron-Distal	4.00906	4.24441	HepG2	ILF3
chr2	64234285	64234341	-	intron-Distal	3.15979	5.77749	HepG2	U2AF2
chr2	64149077	64149123	-	intron-Distal	3.05361	4.57695	HepG2	U2AF2
chr2	64234786	64234808	-	intron-Distal	3.58873	5.06177	HepG2	SUGP2
chr2	64185356	64185407	-	intron-Distal	3.84540	7.38558	HepG2	HNRNPC
chr2	64179813	64179889	-	intron-Distal	3.65548	4.72639	K562	KHSRP
chr2	64142495	64142563	-	intron-Distal	5.31532	8.67089	HepG2	SUGP2
chr2	64239057	64239099	-	intron-Distal	4.30623	5.09669	HepG2	QKI
chr2	64155206	64155278	-	intron-Distal	4.75767	11.63063	HepG2	SUGP2
chr2	64152118	64152159	-	intron-Distal	3.16987	4.18137	HepG2	SUGP2
chr2	64129409	64129479	-	intron-Distal	3.12716	4.23271	HepG2	HNRNPM
chr2	64142069	64142119	-	intron-Distal	3.65435	8.23930	HepG2	SUGP2
chr2	64152816	64152852	-	intron-Distal	3.31322	6.07779	HepG2	SUGP2
chr2	64235011	64235119	-	intron-Distal	4.65126	16.69254	HepG2	MATR3
chr2	64159927	64160012	-	intron-Distal	3.12699	3.27276	HepG2	HNRNPL
chr2	64142437	64142479	-	intron-Distal	3.60780	3.84025	HepG2	SUGP2
chr2	64195806	64195921	-	intron-Distal	3.97997	12.77157	K562	PTBP1
chr2	64234975	64235109	-	intron-Distal	3.71243	9.14535	HepG2	PTBP1
chr2	64155047	64155098	-	intron-Distal	5.33334	6.76922	HepG2	PTBP1
chr2	64195885	64195922	-	intron-Distal	4.54302	22.65103	HepG2	PTBP1
chr2	64129447	64129543	-	intron-Distal	5.06324	7.87294	HepG2	MATR3
chr2	64214382	64214470	-	intron-Distal	3.15679	5.06972	HepG2	HLTF
chr2	64165079	64165143	-	intron-Distal	4.64990	9.72544	K562	AGGF1
chr2	64234057	64234139	-	intron-Distal	3.53809	4.08064	K562	KHSRP
chr2	64223969	64224017	-	intron-Distal	3.14402	4.35275	HepG2	HLTF
chr2	64129345	64129433	-	intron-Distal	3.25108	3.83994	HepG2	MATR3
chr2	64235694	64235768	-	intron-Distal	3.50689	11.29326	HepG2	SUGP2
chr2	64231827	64231890	-	intron-Distal	3.83057	3.42844	K562	KHSRP
chr2	64154528	64154600	-	intron-Distal	3.64890	8.97638	HepG2	SUGP2
chr2	64195093	64195178	-	intron-Distal	4.25110	3.27714	HepG2	HNRNPL
chr2	64155195	64155273	-	intron-Distal	4.09801	9.60806	HepG2	MATR3
chr2	64136443	64136493	-	intron-Distal	4.04037	6.41317	HepG2	QKI
chr2	64184717	64184850	-	intron-Distal	3.34557	12.90299	HepG2	QKI
chr2	64232114	64232229	-	intron-Distal	3.16744	5.80023	HepG2	PABPN1
chr2	64156876	64156949	-	intron-Distal	4.24970	6.51675	HepG2	SUGP2
chr2	64239121	64239171	-	intron-Distal	5.06006	6.23638	HepG2	QKI
chr2	64227259	64227335	-	intron-Distal	3.85238	3.65589	K562	SAFB2
chr2	64179708	64179744	-	intron-Distal	4.17907	3.73609	HepG2	KHSRP
chr2	64142230	64142291	-	intron-Distal	3.88512	3.61897	HepG2	HNRNPC
chr2	64235797	64235865	-	intron-Distal	3.87051	3.47525	K562	MATR3
chr2	64146771	64146842	-	intron-Distal	3.68736	7.26899	HepG2	KHSRP
chr2	64239057	64239194	-	intron-Distal	5.01158	10.34143	K562	QKI
chr2	64160012	64160080	-	intron-Distal	4.61233	5.88023	HepG2	HNRNPL
chr2	64234845	64234923	-	intron-Distal	3.67885	5.06208	K562	MATR3
chr2	64154550	64154619	-	intron-Distal	5.25365	8.23333	HepG2	MATR3
chr2	64213863	64213900	-	intron-Distal	4.64204	5.90710	HepG2	HLTF
chr2	64156877	64156922	-	intron-Distal	4.30747	3.30696	K562	EXOSC5
chr2	64148492	64148551	-	intron-Distal,intron-Proximal	3.33397	12.38528	HepG2	U2AF2
chr2	64141457	64141538	-	intron-Distal,intron-Proximal	4.15342	3.24603	K562	KHSRP
chr2	64165086	64165141	-	intron-Distal	4.34089	17.46452	HepG2	HNRNPL
chr2	64234855	64234906	-	intron-Distal	3.95998	3.89405	HepG2	PTBP1
chr2	64225176	64225223	-	intron-Distal	3.56504	3.08145	HepG2	HLTF
chr2	64148184	64148226	-	intron-Distal	3.19549	3.78824	HepG2	KHSRP
chr2	64141883	64141910	-	intron-Distal	3.09777	3.40206	HepG2	HNRNPC
chr2	64188575	64188631	-	intron-Distal	3.18649	4.85249	HepG2	U2AF2
chr2	64224365	64224471	-	intron-Distal	3.05399	3.55860	K562	SAFB2
chr2	64189086	64189149	-	intron-Distal,intron-Proximal	3.56972	4.82741	HepG2	KHSRP
chr2	64230031	64230097	-	intron-Distal	4.80339	8.20250	HepG2	CSTF2
chr2	64165076	64165132	-	intron-Distal	4.21841	4.41148	HepG2	GTF2F1
chr2	64137635	64137726	-	intron-Distal	3.29620	4.26114	HepG2	HNRNPL
chr2	64235499	64235550	-	intron-Distal	4.09667	7.56582	HepG2	HNRNPC
chr2	64132414	64132556	-	intron-Distal	3.00124	3.46531	K562	KHSRP
chr2	64153234	64153311	-	intron-Distal	3.63238	9.84031	HepG2	SUGP2
chr2	64128738	64128777	-	intron-Distal	3.80902	3.39864	HepG2	SUGP2
chr2	64155044	64155088	-	intron-Distal	3.68003	3.59523	HepG2	SUGP2
chr2	64195809	64195843	-	intron-Distal	3.44673	14.08725	HepG2	PTBP1
chr2	64246060	64246071	-	intron-Distal	4.74449	5.32906	HepG2	AQR
chr2	64156207	64156258	-	intron-Distal	4.23815	4.03915	HepG2	SUGP2
chr2	64228067	64228130	-	intron-Distal	4.15958	4.10529	HepG2	SRSF9
chr2	64141667	64141702	-	intron-Distal	4.69624	6.36848	HepG2	SUGP2
chr2	64235879	64235927	-	intron-Distal	4.10362	6.57428	HepG2	PTBP1
chr2	64235511	64235551	-	intron-Distal	3.24631	6.11545	HepG2	MATR3
chr2	64179784	64179892	-	intron-Distal	3.68619	6.99408	HepG2	KHSRP
chr2	64214020	64214065	-	intron-Distal	4.50453	5.31233	HepG2	HLTF
chr2	64227261	64227328	-	intron-Distal	4.02235	10.02145	HepG2	HLTF
chr2	64162102	64162152	-	intron-Distal	3.62090	6.98080	HepG2	QKI
chr2	64142727	64142793	-	intron-Distal	3.08239	8.72315	HepG2	SUGP2
chr2	64224527	64224587	-	intron-Distal	5.05502	5.92514	HepG2	HLTF
chr2	64195024	64195100	-	intron-Distal	3.89610	3.89405	HepG2	PTBP1
chr2	64235113	64235141	-	intron-Distal	3.50305	6.55984	HepG2	SUGP2
chr2	64234152	64234221	-	intron-Distal	3.17205	3.30246	HepG2	U2AF1
chr2	64145268	64145376	-	intron-Distal	3.10160	3.42293	HepG2	HNRNPC
chr2	64246034	64246060	-	intron-Distal	4.88024	6.03362	HepG2	AQR
chr2	64142336	64142383	-	intron-Distal	3.49404	6.79980	HepG2	SUGP2
chr2	64167876	64167995	-	intron-Distal	3.83139	10.99111	HepG2	HNRNPL
chr2	64141212	64141288	-	intron-Distal,intron-Proximal	4.73204	4.51735	HepG2	QKI
chr2	64129479	64129571	-	intron-Distal	4.76593	5.02084	HepG2	HNRNPM
chr2	64154627	64154764	-	intron-Distal	3.74303	5.62053	HepG2	HNRNPM
chr2	64154675	64154735	-	intron-Distal	3.87182	8.23930	HepG2	SUGP2
chr2	64139573	64139614	-	intron-Distal,intron-Proximal	4.31401	3.93614	HepG2	AQR
chr2	64225235	64225368	-	intron-Distal	4.71092	7.72253	HepG2	HLTF
chr2	64228081	64228161	-	intron-Distal	4.02823	4.47120	K562	PPIL4
chr2	64142774	64142876	-	intron-Distal	3.73272	6.10762	HepG2	PTBP1
chr2	64185110	64185189	-	intron-Distal	3.46273	11.53298	HepG2	U2AF2
chr2	64185192	64185289	-	intron-Distal	3.34607	4.70224	K562	KHSRP
chr2	64235030	64235113	-	intron-Distal	3.27179	15.48302	HepG2	SUGP2
chr2	64177520	64177605	-	intron-Distal	3.53973	9.15184	HepG2	HLTF
chr2	64160584	64160675	-	intron-Distal	3.99832	3.45805	K562	KHSRP
chr2	64165402	64165410	-	intron-Distal	3.16795	3.84024	HepG2	HNRNPL
chr2	64146865	64146946	-	intron-Distal,intron-Proximal	4.01626	6.92711	HepG2	KHSRP
chr2	64162037	64162102	-	intron-Distal	5.16868	10.58655	HepG2	QKI
chr2	64151973	64152008	-	intron-Distal	4.07354	8.31041	HepG2	SUGP2
chr2	64165138	64165248	-	intron-Distal	3.71098	6.00711	K562	HNRNPL
chr2	64242459	64242543	-	intron-Distal	5.10510	8.68064	HepG2	QKI
chr2	64165141	64165171	-	intron-Distal	3.20905	8.25667	HepG2	HNRNPL
chr2	64234119	64234225	-	intron-Distal	3.52743	13.81936	HepG2	U2AF2
chr2	64234145	64234225	-	intron-Distal	3.30560	6.80220	K562	U2AF2
chr2	64215311	64215372	-	intron-Distal	3.02935	4.28238	HepG2	HLTF
chr2	64195843	64195885	-	intron-Distal	4.89022	51.86246	HepG2	PTBP1
chr2	64199408	64199446	-	intron-Distal,intron-Proximal	4.37032	3.25089	HepG2	AQR
chr2	64224383	64224499	-	intron-Distal	5.05775	14.65728	HepG2	HLTF
chr2	64162152	64162228	-	intron-Distal	4.38452	17.46638	HepG2	QKI
chr2	64152364	64152453	-	intron-Distal	3.31288	9.40206	HepG2	SUGP2
chr2	64213517	64213574	-	intron-Distal	3.38162	4.90436	HepG2	HLTF
chr2	64151930	64151973	-	intron-Distal	3.37763	8.75882	HepG2	SUGP2
chr2	64165410	64165443	-	intron-Distal	3.87185	17.52415	HepG2	HNRNPL
chr2	64165399	64165451	-	intron-Distal	3.71418	4.20880	HepG2	GTF2F1
chr2	64165386	64165514	-	intron-Distal	4.08284	8.39523	K562	HNRNPL
chr2	64165443	64165468	-	intron-Distal	3.41803	8.40036	HepG2	HNRNPL
chr2	64167643	64167682	-	intron-Distal	4.98545	8.21857	HepG2	ILF3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for VPS54 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VPS54 is not available on ENCORE database.
115 RBPs can affect the levels of VPS54.

The Knockdown/knockout RNA-Seq assay for VPS54 is not available on ENCORE database.

115 RBPs can affect the gene expression of VPS54 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VPS54	ENSG00000143952.15	3319.97680	2491.41480	0.41410	4.64640	3.28780	HepG2	AATF
VPS54	ENSG00000143952.15	1663.07140	3055.57530	-0.87760	12.73760	10.96280	HepG2	ABCF1
VPS54	ENSG00000143952.15	2632.76610	3181.88520	-0.27330	4.66830	3.91740	HepG2	ACO1
VPS54	ENSG00000143952.15	1060.35980	2667.90770	-1.33120	31.32830	28.66020	HepG2	ADAR
VPS54	ENSG00000143952.15	3819.43030	5061.05280	-0.40610	3.73630	2.82790	HepG2	ASCC1
VPS54	ENSG00000143952.15	6542.94860	4810.50910	0.44370	11.21450	9.98940	HepG2	AUH
VPS54	ENSG00000143952.15	2476.07090	1726.26700	0.52030	6.30740	5.44520	HepG2	BOP1
VPS54	ENSG00000143952.15	2716.12790	4054.21000	-0.57790	4.97280	3.64980	HepG2	CCAR1
VPS54	ENSG00000143952.15	3294.61040	4808.32900	-0.54540	6.54440	5.39030	HepG2	CIRBP
VPS54	ENSG00000143952.15	1164.89770	1584.77240	-0.44410	4.16630	3.33890	HepG2	CPSF6
VPS54	ENSG00000143952.15	2183.95370	2735.89090	-0.32510	4.40340	3.11840	HepG2	YBX3
VPS54	ENSG00000143952.15	3492.49450	4023.73500	-0.20430	2.52210	1.90330	HepG2	CELF1
VPS54	ENSG00000143952.15	3853.91910	4326.88350	-0.16700	2.75800	2.01730	HepG2	DAZAP1
VPS54	ENSG00000143952.15	2025.26040	2942.73260	-0.53900	15.76360	14.13910	HepG2	DDX19B
VPS54	ENSG00000143952.15	1059.58260	2748.73880	-1.37530	39.41780	37.31380	HepG2	DDX21
VPS54	ENSG00000143952.15	3795.42250	5859.39260	-0.62650	7.85660	6.85350	HepG2	DDX3X
VPS54	ENSG00000143952.15	3484.43220	1799.63700	0.95310	7.52180	5.95370	HepG2	DDX59
VPS54	ENSG00000143952.15	2216.45800	2754.71690	-0.31360	2.49630	1.53210	HepG2	DDX5
VPS54	ENSG00000143952.15	3450.94550	2591.09320	0.41330	4.71730	3.45170	HepG2	DHX30
VPS54	ENSG00000143952.15	1755.90730	3044.17080	-0.79380	26.47290	24.91010	HepG2	DKC1
VPS54	ENSG00000143952.15	3254.57660	2686.47810	0.27670	3.55600	2.76530	HepG2	DNAJC21
VPS54	ENSG00000143952.15	2338.75390	2662.70010	-0.18710	2.56300	1.93120	HepG2	DNAJC2
VPS54	ENSG00000143952.15	1310.19470	2940.86210	-1.16650	11.10380	9.42010	HepG2	EEF2
VPS54	ENSG00000143952.15	3728.67140	2531.21890	0.55870	4.78140	3.32140	HepG2	AGO1
VPS54	ENSG00000143952.15	3863.27020	4838.68090	-0.32480	2.55000	1.98080	HepG2	EIF2S1
VPS54	ENSG00000143952.15	1650.72130	2387.51990	-0.53240	2.78150	1.87600	HepG2	EIF3D
VPS54	ENSG00000143952.15	2086.92320	2595.76610	-0.31480	3.32120	2.15260	HepG2	EIF3G
VPS54	ENSG00000143952.15	2783.85350	5347.45850	-0.94180	14.01600	12.60100	HepG2	EIF4A3
VPS54	ENSG00000143952.15	4038.81560	5206.22010	-0.36630	2.17220	1.56060	HepG2	EIF4B
VPS54	ENSG00000143952.15	6742.79480	4268.40840	0.65950	23.37150	21.45100	HepG2	EIF4G1
VPS54	ENSG00000143952.15	4827.96940	5523.15110	-0.19410	2.50890	1.93210	HepG2	ETF1
VPS54	ENSG00000143952.15	1740.46460	3109.16360	-0.83710	18.05640	16.05940	HepG2	EWSR1
VPS54	ENSG00000143952.15	3699.40200	2619.47090	0.49790	7.06090	5.38860	HepG2	FASTKD2
VPS54	ENSG00000143952.15	2513.61270	1587.56090	0.66290	2.69260	1.68980	HepG2	FTO
VPS54	ENSG00000143952.15	2708.97460	5394.91570	-0.99390	18.86980	17.24240	HepG2	FXR1
VPS54	ENSG00000143952.15	4222.40480	5312.94090	-0.33140	2.77360	1.88220	HepG2	G3BP2
VPS54	ENSG00000143952.15	914.50110	2125.83610	-1.21700	11.92600	10.14810	HepG2	GEMIN5
VPS54	ENSG00000143952.15	1445.58490	1796.36800	-0.31340	1.98350	1.43550	HepG2	GPKOW
VPS54	ENSG00000143952.15	3957.64640	3037.71650	0.38160	7.92430	6.37980	HepG2	HDGF
VPS54	ENSG00000143952.15	770.49720	2712.21460	-1.81560	64.02100	61.77730	HepG2	HNRNPA1
VPS54	ENSG00000143952.15	2188.87410	3016.81890	-0.46280	5.60450	4.64520	HepG2	HNRNPC
VPS54	ENSG00000143952.15	2461.17990	2151.83340	0.19370	1.96540	1.35360	HepG2	HNRNPF
VPS54	ENSG00000143952.15	3386.13980	3941.57510	-0.21910	4.34440	3.51320	HepG2	HNRNPL
VPS54	ENSG00000143952.15	2191.02600	2996.87490	-0.45190	10.24520	9.14070	HepG2	HNRNPU
VPS54	ENSG00000143952.15	3557.34950	5087.36330	-0.51610	5.77780	4.83650	HepG2	IGF2BP2
VPS54	ENSG00000143952.15	4169.92710	5482.34190	-0.39480	2.74690	1.56100	HepG2	KHDRBS1
VPS54	ENSG00000143952.15	2926.15870	4279.10560	-0.54830	4.73880	3.64320	HepG2	LARP4
VPS54	ENSG00000143952.15	2993.70720	5396.79720	-0.85020	13.63620	12.22610	HepG2	MAGOH
VPS54	ENSG00000143952.15	3575.31570	5427.07490	-0.60210	6.51350	5.57790	HepG2	MATR3
VPS54	ENSG00000143952.15	1569.34940	2498.89330	-0.67110	2.80020	1.74220	HepG2	METAP2
VPS54	ENSG00000143952.15	1505.39320	2497.64950	-0.73040	12.94300	11.32770	HepG2	MSI2
VPS54	ENSG00000143952.15	2621.13990	5554.97190	-1.08360	20.45890	18.84090	HepG2	NCBP2
VPS54	ENSG00000143952.15	2010.11020	1520.13770	0.40300	3.54840	2.70140	HepG2	NSUN2
VPS54	ENSG00000143952.15	3728.88380	5259.95660	-0.49630	2.61870	1.75970	HepG2	PABPC1
VPS54	ENSG00000143952.15	2322.63220	2966.41610	-0.35300	6.10170	4.92180	HepG2	PARN
VPS54	ENSG00000143952.15	4147.35220	4937.70160	-0.25160	4.08800	3.37710	HepG2	PCBP1
VPS54	ENSG00000143952.15	2325.59020	2672.97620	-0.20090	1.96670	1.33630	HepG2	PPIL4
VPS54	ENSG00000143952.15	2612.17870	2296.04750	0.18600	2.00060	1.33550	HepG2	PRPF4
VPS54	ENSG00000143952.15	1995.02690	3373.87530	-0.75800	3.73520	2.32970	HepG2	PRPF6
VPS54	ENSG00000143952.15	3107.06700	5024.26850	-0.69340	24.65200	23.32770	HepG2	PTBP1
VPS54	ENSG00000143952.15	2227.09550	4095.56010	-0.87890	20.64660	19.22110	HepG2	PUF60
VPS54	ENSG00000143952.15	3608.99900	4347.49410	-0.26860	6.42390	5.59910	HepG2	PUM1
VPS54	ENSG00000143952.15	2765.71450	4344.39540	-0.65150	8.36290	7.22470	HepG2	PUM2
VPS54	ENSG00000143952.15	2178.90840	3240.93890	-0.57280	17.59430	16.27950	HepG2	PUS1
VPS54	ENSG00000143952.15	5168.28780	3507.70140	0.55910	11.27000	9.71930	HepG2	RBM15
VPS54	ENSG00000143952.15	2086.61270	4616.32330	-1.14560	51.40250	49.71860	HepG2	RBM22
VPS54	ENSG00000143952.15	1609.67720	2903.53800	-0.85100	8.74290	6.86620	HepG2	RCC2
VPS54	ENSG00000143952.15	2158.13160	5591.55130	-1.37350	89.98400	88.01100	HepG2	NELFE
VPS54	ENSG00000143952.15	3692.18950	5207.72870	-0.49620	14.14600	12.92150	HepG2	RECQL
VPS54	ENSG00000143952.15	769.06060	2322.98050	-1.59480	19.47070	18.06260	HepG2	RPS19
VPS54	ENSG00000143952.15	2129.23740	3297.86440	-0.63120	5.82220	4.68500	HepG2	RPS2
VPS54	ENSG00000143952.15	3080.62980	5777.63020	-0.90730	10.79680	9.26330	HepG2	RPS3A
VPS54	ENSG00000143952.15	3866.71780	1844.16510	1.06800	19.12620	17.40840	HepG2	RRP9
VPS54	ENSG00000143952.15	2305.62360	2668.86050	-0.21110	2.90510	2.24880	HepG2	SAFB2
VPS54	ENSG00000143952.15	4024.05850	5440.69410	-0.43510	3.22560	1.81990	HepG2	SART3
VPS54	ENSG00000143952.15	1604.95290	2331.76000	-0.53890	3.75020	2.65400	HepG2	SERBP1
VPS54	ENSG00000143952.15	1217.90750	2417.47870	-0.98910	3.18090	1.69840	HepG2	SF1
VPS54	ENSG00000143952.15	1839.89410	3043.82180	-0.72630	6.64200	5.56930	HepG2	SF3A3
VPS54	ENSG00000143952.15	2653.27300	1696.77900	0.64490	9.17960	7.96830	HepG2	SF3B1
VPS54	ENSG00000143952.15	4412.16560	5230.96140	-0.24560	4.01170	3.32120	HepG2	SF3B4
VPS54	ENSG00000143952.15	1935.73550	3112.36060	-0.68510	28.78830	27.07550	HepG2	SMN1
VPS54	ENSG00000143952.15	3935.67660	1887.98390	1.05970	11.75800	10.15990	HepG2	SNRNP70
VPS54	ENSG00000143952.15	2726.28080	5459.97100	-1.00200	56.90890	55.37850	HepG2	SRSF1
VPS54	ENSG00000143952.15	3293.61560	4043.62060	-0.29600	5.27880	4.45550	HepG2	SRSF5
VPS54	ENSG00000143952.15	2521.32980	2114.13690	0.25400	3.06590	2.33930	HepG2	SRSF7
VPS54	ENSG00000143952.15	5685.48780	4441.95990	0.35600	8.29030	7.42640	HepG2	SRSF9
VPS54	ENSG00000143952.15	2477.28390	4526.91670	-0.86980	39.97240	38.56230	HepG2	SSB
VPS54	ENSG00000143952.15	4473.05300	2894.63160	0.62780	4.84000	3.24290	HepG2	SUB1
VPS54	ENSG00000143952.15	2964.17170	4598.83770	-0.63360	26.36640	24.76880	HepG2	SUCLG1
VPS54	ENSG00000143952.15	1617.23540	2083.86140	-0.36570	3.76990	2.68560	HepG2	SUPT6H
VPS54	ENSG00000143952.15	1838.21990	2405.02790	-0.38770	2.26320	1.64310	HepG2	SUPV3L1
VPS54	ENSG00000143952.15	4136.44020	4907.57900	-0.24660	3.33750	2.73030	HepG2	TAF15
VPS54	ENSG00000143952.15	2385.40800	1671.17900	0.51330	5.91210	4.90980	HepG2	TARDBP
VPS54	ENSG00000143952.15	2270.31420	4164.91670	-0.87540	4.90680	3.51740	HepG2	TBRG4
VPS54	ENSG00000143952.15	5493.71880	4509.45580	0.28470	2.03130	1.31250	HepG2	TIA1
VPS54	ENSG00000143952.15	2081.70260	2912.09290	-0.48430	7.24480	6.50510	HepG2	TIAL1
VPS54	ENSG00000143952.15	2565.29490	2938.05090	-0.19570	2.36620	1.83620	HepG2	TRIM56
VPS54	ENSG00000143952.15	1279.49450	1897.28870	-0.56840	4.26440	2.33600	HepG2	TROVE2
VPS54	ENSG00000143952.15	2151.30320	2639.69940	-0.29520	2.06200	1.51120	HepG2	U2AF1
VPS54	ENSG00000143952.15	5899.63480	4234.84840	0.47820	2.89400	2.03950	HepG2	UBE2L3
VPS54	ENSG00000143952.15	2298.57200	1420.85680	0.69390	9.43510	8.03570	HepG2	UCHL5
VPS54	ENSG00000143952.15	1412.08830	2202.78150	-0.64150	3.08680	2.02650	HepG2	UPF2
VPS54	ENSG00000143952.15	1566.31380	2774.60010	-0.82490	16.27580	14.05480	HepG2	UTP18
VPS54	ENSG00000143952.15	1975.81490	2606.16820	-0.39950	7.88220	6.95450	HepG2	UTP3
VPS54	ENSG00000143952.15	3560.00080	5174.93910	-0.53970	4.08870	2.74960	HepG2	XPO5
VPS54	ENSG00000143952.15	1307.23150	2367.48030	-0.85680	8.58480	7.32360	HepG2	XRN2
VPS54	ENSG00000143952.15	2521.33830	2968.82780	-0.23570	4.09800	3.46810	HepG2	ZNF622
VPS54	ENSG00000143952.15	753.14410	1278.12330	-0.76300	15.79650	14.55460	K562	AGGF1
VPS54	ENSG00000143952.15	884.25360	1329.92350	-0.58880	6.93170	5.85850	K562	AKAP8L
VPS54	ENSG00000143952.15	1066.88980	1377.09060	-0.36820	2.91920	2.31850	K562	AQR
VPS54	ENSG00000143952.15	1194.98690	864.33720	0.46720	2.26380	1.32190	K562	CNOT7
VPS54	ENSG00000143952.15	546.72980	696.02060	-0.34830	2.94700	1.57760	K562	DDX27
VPS54	ENSG00000143952.15	1129.87150	1431.22910	-0.34110	4.07960	2.98630	K562	DKC1
VPS54	ENSG00000143952.15	608.18140	755.76760	-0.31340	2.42390	1.67710	K562	EIF3G
VPS54	ENSG00000143952.15	520.81750	689.10180	-0.40390	3.03720	1.66960	K562	EWSR1
VPS54	ENSG00000143952.15	631.02830	820.98890	-0.37970	3.47580	2.80920	K562	FXR1
VPS54	ENSG00000143952.15	1163.50700	859.76680	0.43640	2.58180	1.90340	K562	G3BP2
VPS54	ENSG00000143952.15	733.48160	567.80640	0.36930	2.38610	1.64600	K562	GPKOW
VPS54	ENSG00000143952.15	1003.34460	806.54590	0.31490	3.23840	2.36470	K562	MTPAP
VPS54	ENSG00000143952.15	610.26690	1029.42530	-0.75430	11.08850	9.82090	K562	PTBP1
VPS54	ENSG00000143952.15	1534.26320	1813.22690	-0.24100	2.45540	1.54980	K562	PUM2
VPS54	ENSG00000143952.15	660.36380	1319.07460	-0.99820	16.15500	14.88520	K562	PUS1
VPS54	ENSG00000143952.15	1191.26080	820.34880	0.53810	2.86220	1.41550	K562	RAVER1
VPS54	ENSG00000143952.15	914.09290	1285.11070	-0.49150	6.42880	5.55090	K562	RBM15
VPS54	ENSG00000143952.15	683.68770	987.23820	-0.53010	5.06570	3.88930	K562	RBM22
VPS54	ENSG00000143952.15	361.27040	565.26380	-0.64580	3.54300	1.75880	K562	SERBP1
VPS54	ENSG00000143952.15	534.52520	894.13100	-0.74220	10.39110	8.68490	K562	SF3B4
VPS54	ENSG00000143952.15	660.50020	1021.38940	-0.62890	6.36570	5.25200	K562	TARDBP
VPS54	ENSG00000143952.15	338.52950	533.26890	-0.65560	5.23460	3.83230	K562	TRIM56
VPS54	ENSG00000143952.15	741.20290	970.77690	-0.38930	4.35890	2.76230	K562	TROVE2
VPS54	ENSG00000143952.15	630.89520	833.53370	-0.40180	2.39720	1.38960	K562	U2AF1
VPS54	ENSG00000143952.15	660.61300	1337.24700	-1.01740	6.79410	4.53610	K562	UTP18
VPS54	ENSG00000143952.15	1870.52970	1551.19370	0.27000	2.10860	1.36520	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VPS54 is not available on ENCORE database.

29 RBPs can affect the splicing of VPS54 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	VPS54	ENSG00000143952.15	chr2	-	64140356	64140444			64139673	64139795	64141315	64141421	-0.14500	0.00093	0.01926	excluded	HepG2	U2AF1
SE	VPS54	ENSG00000143952.15	chr2	-	64191241	64191316			64189191	64189577	64192968	64193100	0.05100	0.00115	0.08852	included	HepG2	PRPF8
SE	VPS54	ENSG00000143952.15	chr2	-	64140958	64141059			64140356	64140444	64141315	64141421	0.05300	0.00003	0.00473	included	HepG2	QKI
SE	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64199299	64199378	64210997	64211153	-0.17300	0.01137	0.08986	excluded	K562	AQR
SE	VPS54	ENSG00000143952.15	chr2	-	64160806	64161147			64148339	64148469	64169598	64169695	-0.08900	0.00400	0.05250	excluded	K562	PUS1
SE	VPS54	ENSG00000143952.15	chr2	-	64140356	64140444			64139673	64139795	64141315	64141421	-0.07300	0.00000	0.00071	excluded	HepG2	NCBP2
SE	VPS54	ENSG00000143952.15	chr2	-	64140958	64141059			64140356	64140444	64141315	64141421	0.12600	0.00609	0.09400	included	K562	U2AF1
SE	VPS54	ENSG00000143952.15	chr2	-	64140356	64140444			64139673	64139795	64141315	64141421	-0.12500	0.00165	0.04536	excluded	HepG2	SF3A3
SE	VPS54	ENSG00000143952.15	chr2	-	64140958	64141059			64140356	64140444	64141315	64141421	0.07000	0.00092	0.06153	included	HepG2	IGF2BP3
SE	VPS54	ENSG00000143952.15	chr2	-	64140958	64141059			64140356	64140444	64141315	64141421	0.09600	0.00050	0.05079	included	HepG2	SUPV3L1
SE	VPS54	ENSG00000143952.15	chr2	-	64140958	64141059			64140356	64140444	64141315	64141421	0.05900	0.00002	0.00542	included	HepG2	TAF15
SE	VPS54	ENSG00000143952.15	chr2	-	64140958	64141059			64140356	64140444	64141315	64141421	0.11700	0.00112	0.04108	included	K562	HNRNPU
SE	VPS54	ENSG00000143952.15	chr2	-	64174516	64174624			64171733	64171789	64176170	64176297	-0.24500	0.00195	0.04648	excluded	K562	AGGF1
SE	VPS54	ENSG00000143952.15	chr2	-	64140958	64141059			64140356	64140444	64141315	64141421	0.17000	0.00000	0.00033	included	HepG2	HNRNPU
SE	VPS54	ENSG00000143952.15	chr2	-	64160806	64161147			64148339	64148469	64169598	64169695	-0.07100	0.00072	0.02963	excluded	HepG2	HNRNPC
SE	VPS54	ENSG00000143952.15	chr2	-	64140958	64141059			64140356	64140444	64141315	64141421	0.05100	0.00011	0.01151	included	HepG2	SRSF9
SE	VPS54	ENSG00000143952.15	chr2	-	64140958	64141059			64140356	64140444	64141315	64141421	0.06400	0.00056	0.06727	included	HepG2	KHSRP
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.16200	0.00039	0.09585	shorter	HepG2	QKI
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64208985			64208779	64208824	64210997	64211153	-0.05700	0.00034	0.03088	shorter	HepG2	SF3A3
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.20300	0.00001	0.02761	shorter	HepG2	HNRNPM
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.28100	0.00000	0.00000	shorter	HepG2	HNRNPU
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.20900	0.00006	0.01753	shorter	HepG2	PTBP1
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.14400	0.00105	0.08172	shorter	HepG2	HNRNPK
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.17700	0.00000	0.00194	shorter	HepG2	NKRF
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.27700	0.00000	0.00000	shorter	HepG2	AKAP1
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.23500	0.00000	0.00015	shorter	HepG2	MATR3
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.39600	0.00000	0.00005	shorter	K562	U2AF2
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.21800	0.00003	0.01940	shorter	HepG2	IGF2BP3
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.19700	0.00005	0.00743	shorter	HepG2	SRSF1
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.40800	0.00000	0.00000	shorter	HepG2	U2AF2
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.29700	0.00000	0.00000	shorter	HepG2	TIAL1
A3SS	VPS54	ENSG00000143952.15	chr2	-	64148339	64148557			64148339	64148469	64160806	64161147	0.07400	0.00285	0.01765	longer	K562	AQR
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.20100	0.00000	0.00340	shorter	HepG2	PCBP2
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.21200	0.00006	0.06131	shorter	HepG2	EIF3D
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.21300	0.00000	0.00016	shorter	HepG2	U2AF1
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.20600	0.00000	0.00369	shorter	HepG2	G3BP1
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.23500	0.00001	0.00933	shorter	HepG2	EFTUD2
A3SS	VPS54	ENSG00000143952.15	chr2	-	64208779	64209021			64208779	64208985	64210997	64211153	-0.18300	0.00003	0.00478	shorter	HepG2	SF3B4
MXE	VPS54	ENSG00000143952.15	chr2	-	64140356	64140444	64140958	64141059	64139673	64139795	64141315	64141421	0.06700	0.00031	0.01256	1included	HepG2	HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VPS54

General Information

Functions

Localization

Domains (AlphaFold: VPS54)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VPS54 is not avaliable on ENCORE database.

31 proteins are bound to VPS54 RNA:

eCLIP assay for VPS54 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VPS54 is not available on ENCORE database.

115 RBPs can affect the gene expression of VPS54 :

The Knockdown/knockout RNA-Seq assay for VPS54 is not available on ENCORE database.

29 RBPs can affect the splicing of VPS54 :

The Knockdown/knockout RNA-Seq assay for VPS54 is not avaliable on ENCORE database.