VAMP3

General Information

Gene Name       : VAMP3
Gene ID             : ENSG00000049245.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VAMP3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VAMP3ENSG00000049245.129.018.999.00ENCSR000AEF
HepG2VAMP3ENSG00000049245.1253.0388.0370.53ENCSR985KAT
K562VAMP3ENSG00000049245.1237.8041.2139.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VAMP3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • VAMP3 RNA is bound by 12 proteins.  







eCLIP assay for VAMP3 is not avaliable on ENCORE database.





12 proteins are bound to VAMP3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr178413437841398+3'-UTR4.452105.43239K562YBX3
chr178399817840045+3'-UTR3.928493.64119HepG2UPF1
chr178402677840308+3'-UTR5.454966.28020HepG2FUBP3
chr178403027840383+3'-UTR3.462826.00918K562FAM120A
chr178413067841343+3'-UTR3.737853.02250K562YBX3
chr178406937840755+3'-UTR3.349474.91258K562YBX3
chr178403087840353+3'-UTR3.770165.80402HepG2FUBP3
chr178413147841418+3'-UTR3.608424.78882K562IGF2BP2
chr178401577840220+3'-UTR4.049024.66555K562FAM120A
chr178399917840041+3'-UTR3.685434.82552K562UPF1
chr178398367839930+3'-UTR3.189515.02670K562TIA1
chr178334857833544+5'-UTR,CDS,intron-Proximal3.367623.16095HepG2U2AF2
chr178334637833558+5'-UTR,CDS,intron-Proximal3.544786.28932HepG2AQR
chr178313847831446+5'-UTR,CDS,intron-Proximal4.326433.86664K562DDX3X
chr178382187838300+CDS,intron-Proximal4.672067.15298K562AQR
chr178373757837446+CDS,intron-Proximal5.353348.03507K562AQR
chr178381567838218+CDS,intron-Proximal4.012855.47926K562AQR
chr178381977838361+CDS,intron-Distal,intron-Proximal3.235987.26597K562PRPF8
chr178317097831810+intron-Distal4.241926.10859HepG2EFTUD2
chr178374187837498+intron-Distal,intron-Proximal3.054953.94281K562PRPF8
chr178315957831655+intron-Distal3.934663.10243K562SLTM
chr178315807831709+intron-Distal6.6136515.75774HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VAMP3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VAMP3 is not available on ENCORE database.

  • 87 RBPs can affect the levels of VAMP3.  








The Knockdown/knockout RNA-Seq assay for VAMP3 is not available on ENCORE database.





87 RBPs can affect the gene expression of VAMP3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VAMP3ENSG00000049245.81129.701801757.22590-0.6374015.8530014.65240HepG2ACO1
VAMP3ENSG00000049245.81265.593701741.95280-0.460904.305503.09140HepG2ADAR
VAMP3ENSG00000049245.84879.865203224.502900.597706.151805.39470HepG2AKAP1
VAMP3ENSG00000049245.81570.204302157.40490-0.458303.176502.54010HepG2BOP1
VAMP3ENSG00000049245.81428.258802069.88230-0.535308.145706.92080HepG2CALR
VAMP3ENSG00000049245.81428.288101066.865300.420803.957902.69770HepG2CSTF2
VAMP3ENSG00000049245.8956.313502512.07320-1.3933061.7142059.49830HepG2CELF1
VAMP3ENSG00000049245.81262.215902701.30580-1.0977058.1228055.65110HepG2DAZAP1
VAMP3ENSG00000049245.81866.556601625.164000.199702.338101.56750HepG2DDX19B
VAMP3ENSG00000049245.82178.682101788.862400.284303.301102.03940HepG2DDX1
VAMP3ENSG00000049245.82480.982401609.966200.623809.060807.90710HepG2DDX21
VAMP3ENSG00000049245.81166.596201575.39630-0.433404.821703.60450HepG2DDX24
VAMP3ENSG00000049245.84143.208203088.963400.423503.833603.10870HepG2DDX3X
VAMP3ENSG00000049245.82322.141401697.962100.451603.748602.86430HepG2DDX55
VAMP3ENSG00000049245.81342.520701681.17880-0.324504.170003.37260HepG2DKC1
VAMP3ENSG00000049245.8856.505201754.09950-1.0342029.5308027.51050HepG2DNAJC21
VAMP3ENSG00000049245.81515.978502550.86780-0.750709.823908.74810HepG2EIF2S1
VAMP3ENSG00000049245.81059.845203098.63550-1.5478085.0198082.60510HepG2ETF1
VAMP3ENSG00000049245.81421.064201717.08860-0.273002.177401.43690HepG2EWSR1
VAMP3ENSG00000049245.82807.462502249.022100.319902.105201.42970HepG2FIP1L1
VAMP3ENSG00000049245.8644.915801413.34810-1.1319016.2152013.63150HepG2FKBP4
VAMP3ENSG00000049245.82018.934002638.42760-0.386102.871902.19440HepG2G3BP1
VAMP3ENSG00000049245.81640.386602800.71520-0.7718011.070409.29510HepG2G3BP2
VAMP3ENSG00000049245.82197.960501770.903300.311602.594501.96670HepG2HNRNPA1
VAMP3ENSG00000049245.83179.297102482.475900.356806.030304.74470HepG2HNRNPA2B1
VAMP3ENSG00000049245.81894.341102223.07030-0.230903.022002.27470HepG2HNRNPF
VAMP3ENSG00000049245.82025.180702671.08610-0.399403.804702.99660HepG2HNRNPK
VAMP3ENSG00000049245.82122.758202460.74670-0.213202.149901.54560HepG2HNRNPL
VAMP3ENSG00000049245.8949.209901956.75330-1.0437037.6929035.68050HepG2HNRNPU
VAMP3ENSG00000049245.8539.247402681.98950-2.3143060.6057057.99040HepG2IGF2BP2
VAMP3ENSG00000049245.8858.673302516.58720-1.5513011.014409.16760HepG2IGF2BP3
VAMP3ENSG00000049245.84017.395402963.537000.438803.177202.28510HepG2LARP4
VAMP3ENSG00000049245.82182.600602860.94520-0.390402.856202.21580HepG2MATR3
VAMP3ENSG00000049245.81329.609602185.03630-0.716705.655404.24520HepG2MTPAP
VAMP3ENSG00000049245.82125.638902678.59810-0.333603.637002.76190HepG2NOL12
VAMP3ENSG00000049245.81448.664201899.90820-0.391202.461701.75550HepG2NSUN2
VAMP3ENSG00000049245.82162.311902657.77140-0.297604.522503.77840HepG2PCBP1
VAMP3ENSG00000049245.8932.808501310.05630-0.490003.712402.79340HepG2PRPF8
VAMP3ENSG00000049245.82044.070802704.35160-0.403807.140906.34230HepG2PTBP1
VAMP3ENSG00000049245.82100.171701789.842800.230602.952702.32150HepG2PUS1
VAMP3ENSG00000049245.8609.678202928.94390-2.26430127.04370124.06240HepG2QKI
VAMP3ENSG00000049245.83148.558502589.893600.281703.822303.23930HepG2RBM22
VAMP3ENSG00000049245.82155.943101647.624900.387803.250502.09870HepG2RCC2
VAMP3ENSG00000049245.81868.340203009.70870-0.6879020.1617018.95950HepG2NELFE
VAMP3ENSG00000049245.82244.522702803.08920-0.320605.253804.43890HepG2RECQL
VAMP3ENSG00000049245.81208.127901871.38320-0.631306.270505.09440HepG2RPS2
VAMP3ENSG00000049245.81130.337801742.59210-0.6245015.4714014.13210HepG2SAFB2
VAMP3ENSG00000049245.83396.485502241.588400.599405.071904.13970HepG2SF3A3
VAMP3ENSG00000049245.82120.117802815.63320-0.409307.914806.99630HepG2SF3B4
VAMP3ENSG00000049245.81916.939202451.52580-0.354907.372606.31170HepG2SLBP
VAMP3ENSG00000049245.81776.592002032.18500-0.193902.430001.82170HepG2SMN1
VAMP3ENSG00000049245.83519.225702925.203000.266604.491603.89760HepG2SRFBP1
VAMP3ENSG00000049245.84350.652002938.889400.5659017.8360016.85440HepG2SRSF1
VAMP3ENSG00000049245.81724.355502282.00990-0.404202.584401.62030HepG2SRSF3
VAMP3ENSG00000049245.82126.949502524.48200-0.247203.364202.68570HepG2SRSF5
VAMP3ENSG00000049245.81865.520502184.16070-0.227502.959002.24280HepG2SRSF7
VAMP3ENSG00000049245.81317.638502539.79240-0.9468036.2204034.85420HepG2SSB
VAMP3ENSG00000049245.8795.742101474.36600-0.889709.394807.27430HepG2STIP1
VAMP3ENSG00000049245.81086.229501690.35770-0.638005.731704.81240HepG2SUPV3L1
VAMP3ENSG00000049245.81280.479802641.52700-1.0447034.8780033.17470HepG2TAF15
VAMP3ENSG00000049245.81193.369202088.14330-0.807207.744906.61060HepG2TARDBP
VAMP3ENSG00000049245.81486.284301133.025600.391402.618601.64600HepG2TFIP11
VAMP3ENSG00000049245.82044.298702427.26860-0.247702.183801.43910HepG2TIA1
VAMP3ENSG00000049245.82331.440301901.457900.294002.980302.46400HepG2TIAL1
VAMP3ENSG00000049245.81271.077001918.34130-0.5938013.6439012.52840HepG2TRIM56
VAMP3ENSG00000049245.81336.471401924.05140-0.525705.316704.46140HepG2U2AF1
VAMP3ENSG00000049245.8932.332001987.94270-1.0924042.3724040.32950HepG2UPF1
VAMP3ENSG00000049245.82231.893901749.255600.351406.734605.76200HepG2ZC3H8
VAMP3ENSG00000049245.83714.500202186.361400.7645037.5241036.11060HepG2ZNF622
VAMP3ENSG00000049245.81522.290401206.319900.335504.187303.51430K562AGGF1
VAMP3ENSG00000049245.81699.471001325.531400.358403.126502.06740K562AKAP8
VAMP3ENSG00000049245.81566.019401255.222700.319102.536401.90990K562AKAP8L
VAMP3ENSG00000049245.84085.236401763.083201.2122030.9841029.21610K562AQR
VAMP3ENSG00000049245.81609.611201317.016000.289302.923401.98580K562ATP5C1
VAMP3ENSG00000049245.8913.367601104.59350-0.274202.640101.70460K562BCLAF1
VAMP3ENSG00000049245.8862.423701261.52730-0.548705.178103.97400K562BOP1
VAMP3ENSG00000049245.81811.226902998.25570-0.7272015.5578013.40410K562CELF1
VAMP3ENSG00000049245.81841.137601415.342800.379303.265701.66650K562DDX19B
VAMP3ENSG00000049245.8736.62700968.69670-0.395103.947901.78400K562DDX24
VAMP3ENSG00000049245.8469.93680627.79180-0.417802.780101.43090K562DNAJC21
VAMP3ENSG00000049245.81074.997501436.06270-0.417805.561904.59390K562EIF2S2
VAMP3ENSG00000049245.8813.749601013.90250-0.317302.569801.80200K562EIF3G
VAMP3ENSG00000049245.81476.50350993.325300.571709.795508.73860K562FXR1
VAMP3ENSG00000049245.8772.90530985.82690-0.351002.605901.50120K562HNRNPF
VAMP3ENSG00000049245.8893.481101404.66820-0.6527011.257409.48790K562HNRNPU
VAMP3ENSG00000049245.8507.860001182.51640-1.2194016.6362013.74350K562IGF2BP2
VAMP3ENSG00000049245.8941.943801202.89760-0.352802.824201.61770K562IGF2BP3
VAMP3ENSG00000049245.81821.711901332.132400.451504.957003.79040K562KIF1C
VAMP3ENSG00000049245.81554.889601046.006500.571803.207902.24410K562NAA15
VAMP3ENSG00000049245.81263.78040953.743200.406004.267902.72770K562NCBP2
VAMP3ENSG00000049245.81336.318801580.58290-0.242203.299802.49140K562NSUN2
VAMP3ENSG00000049245.8785.54370989.76240-0.333402.190601.39400K562PSIP1
VAMP3ENSG00000049245.83638.646602660.824000.451405.539304.38640K562PUF60
VAMP3ENSG00000049245.83373.364402829.937700.253302.797101.72240K562PUM1
VAMP3ENSG00000049245.82510.526901244.892501.0119019.4926018.08070K562PUS1
VAMP3ENSG00000049245.8750.319401181.54710-0.655109.874906.63150K562QKI
VAMP3ENSG00000049245.81945.168101212.913800.6813013.4636012.15060K562RBM15
VAMP3ENSG00000049245.8702.443501218.78190-0.7950010.139707.98820K562NELFE
VAMP3ENSG00000049245.81842.464301559.515000.240402.338201.58280K562SF3A3
VAMP3ENSG00000049245.81639.931801183.915000.470005.637104.63430K562SRSF1
VAMP3ENSG00000049245.8721.516501249.58650-0.792303.894801.94580K562STIP1
VAMP3ENSG00000049245.8552.32800880.46400-0.672705.386103.92890K562SUPV3L1
VAMP3ENSG00000049245.8907.437101134.06330-0.321602.271501.30360K562TRA2A
VAMP3ENSG00000049245.8806.330001011.43940-0.327002.164201.34300K562TRIM56
VAMP3ENSG00000049245.81387.121701675.91930-0.272902.536801.84740K562UPF1
VAMP3ENSG00000049245.82627.931802089.008700.331003.309601.88730K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VAMP3 is not available on ENCORE database.





1 RBPs can affect the splicing of VAMP3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVAMP3ENSG00000049245.8chr1+7833131783325878313287831445783350178335710.188000.000000.00000includedK562AQR
MXEVAMP3ENSG00000049245.8chr1+78335017833571783721978373787831328783144578381777838229-0.155000.000240.002612includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VAMP3 is not avaliable on ENCORE database.