TSC22D2

General Information

Gene Name       : TSC22D2
Gene ID             : ENSG00000196428.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TSC22D2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TSC22D2ENSG00000196428.1211.799.4310.61ENCSR000AEF
HepG2TSC22D2ENSG00000196428.126.568.697.62ENCSR985KAT
K562TSC22D2ENSG00000196428.1217.7519.6818.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TSC22D2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TSC22D2 RNA is bound by 22 proteins.  







eCLIP assay for TSC22D2 is not avaliable on ENCORE database.





22 proteins are bound to TSC22D2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3150177479150177572+3'-UTR4.368225.51992K562IGF2BP1
chr3150176315150176426+3'-UTR,CDS4.295023.57526HepG2IGF2BP1
chr3150176152150176226+3'-UTR,CDS,intron-Proximal3.9733910.83538K562GPKOW
chr3150174836150174952+3'-UTR,CDS,intron-Distal,intron-Proximal3.459288.47924K562SF3B4
chr3150177439150177517+3'-UTR4.454784.73315K562TIA1
chr3150177062150177101+3'-UTR4.3446010.61883K562PUM2
chr3150176314150176358+3'-UTR,CDS3.649843.02541K562IGF2BP2
chr3150176584150176669+3'-UTR3.906883.25872K562IGF2BP1
chr3150156135150156195+3'-UTR,intron-Distal,intron-Proximal3.492465.34873K562KHSRP
chr3150176767150176847+3'-UTR4.315044.61859K562IGF2BP1
chr3150177101150177154+3'-UTR4.9478315.39740K562PUM2
chr3150126855150126895+5'-UTR3.171316.56546K562RBM15
chr3150127049150127098+5'-UTR4.2116614.35009K562RBM15
chr3150126429150126517+5'-UTR3.632573.57687HepG2EIF3H
chr3150127098150127134+5'-UTR3.262605.95627K562RBM15
chr3150126222150126262+5'-UTR3.528254.68928K562RBM15
chr3150127185150127223+CDS3.245165.41108K562RBM15
chr3150128242150128250+CDS3.534945.28657K562RBM15
chr3150140777150140838+CDS,intron-Distal,intron-Proximal3.198439.17902K562KHSRP
chr3150127941150127984+CDS5.6662810.73550K562RBM15
chr3150127759150127768+CDS4.539798.03807K562RBM15
chr3150127768150127790+CDS4.8187910.40953K562RBM15
chr3150127445150127511+CDS3.152005.08489K562FXR2
chr3150127823150127860+CDS3.314884.33023K562ZNF622
chr3150128122150128128+CDS4.434016.09204K562YBX3
chr3150128891150128925+CDS3.373086.78391K562RBM15
chr3150128515150128576+CDS4.899344.75028K562FXR2
chr3150127363150127401+CDS3.573353.63681K562RBM15
chr3150128001150128093+CDS3.492285.65938K562FXR2
chr3150128675150128692+CDS4.365834.48994K562RBM15
chr3150127468150127508+CDS5.336085.85529K562RBM15
chr3150128128150128157+CDS3.120625.51805K562YBX3
chr3150127281150127330+CDS3.371278.10769K562RBM15
chr3150127790150127803+CDS5.6878111.08775K562RBM15
chr3150128609150128654+CDS3.275873.75245K562BUD13
chr3150128501150128580+CDS4.631087.36824K562RBM15
chr3150127460150127468+CDS4.757543.48187K562RBM15
chr3150128979150129026+CDS4.617089.72826K562RBM15
chr3150128129150128177+CDS4.098897.06750K562FMR1
chr3150140666150140681+intron-Distal4.579384.54401K562KHSRP
chr3150145542150145637+intron-Distal3.914789.12099HepG2PTBP1
chr3150159737150159810+intron-Distal3.917073.47525K562MATR3
chr3150160050150160125+intron-Distal5.300796.93116HepG2QKI
chr3150132201150132276+intron-Distal3.334394.43202K562HNRNPL
chr3150148807150148853+intron-Distal3.546053.64762HepG2QKI
chr3150132835150132883+intron-Distal3.004956.38944K562KHSRP
chr3150140606150140666+intron-Distal3.372005.85121K562KHSRP
chr3150174921150174991+intron-Distal,intron-Proximal4.184455.51636K562GPKOW
chr3150140722150140777+intron-Distal,intron-Proximal3.168219.39745K562KHSRP
chr3150132698150132838+intron-Distal3.341555.14345HepG2KHSRP
chr3150165124150165184+intron-Distal3.829283.23532K562MATR3
chr3150145549150145640+intron-Distal5.0792238.64614K562PTBP1
chr3150163137150163242+intron-Distal4.481735.53100K562KHDRBS1
chr3150160035150160129+intron-Distal3.9267116.52221K562QKI
chr3150155751150155842+intron-Distal4.006706.70262K562QKI
chr3150174957150174997+intron-Distal,intron-Proximal5.004253.65355K562EFTUD2
chr3150145108150145176+intron-Distal4.280143.83943K562HNRNPK
chr3150138347150138448+intron-Distal4.201347.29386HepG2U2AF2
chr3150159939150160049+intron-Distal3.375783.30286HepG2PTBP1
chr3150152301150152415+intron-Distal3.919593.19904K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TSC22D2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TSC22D2 is not available on ENCORE database.

  • 90 RBPs can affect the levels of TSC22D2.  








The Knockdown/knockout RNA-Seq assay for TSC22D2 is not available on ENCORE database.





90 RBPs can affect the gene expression of TSC22D2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TSC22D2ENSG00000196428.8580.28870338.630000.7770010.572009.54410HepG2ACO1
TSC22D2ENSG00000196428.8486.20380340.184800.515104.376303.42690HepG2AKAP8L
TSC22D2ENSG00000196428.8607.67030441.655800.460304.178703.36790HepG2AUH
TSC22D2ENSG00000196428.8723.26540493.330800.551904.552503.80700HepG2BOP1
TSC22D2ENSG00000196428.8478.23390333.612500.519403.560302.70230HepG2CALR
TSC22D2ENSG00000196428.8455.55430340.824200.418502.851702.20070HepG2CELF1
TSC22D2ENSG00000196428.8278.26900414.20180-0.573903.195902.52990HepG2DDX3X
TSC22D2ENSG00000196428.8408.70540246.296300.730603.678702.80050HepG2DDX55
TSC22D2ENSG00000196428.8723.92300368.058700.975807.770206.64750HepG2EIF4B
TSC22D2ENSG00000196428.8729.71280507.089600.525005.863405.04260HepG2ETF1
TSC22D2ENSG00000196428.8518.83900330.863400.649005.578304.38790HepG2EWSR1
TSC22D2ENSG00000196428.8705.15190479.476800.556403.323102.48730HepG2FIP1L1
TSC22D2ENSG00000196428.8373.02800513.38920-0.460802.394601.79510HepG2GPKOW
TSC22D2ENSG00000196428.8520.20210359.614800.532503.180702.46210HepG2IGF2BP2
TSC22D2ENSG00000196428.8776.94020541.967700.519503.039102.16500HepG2LARP4
TSC22D2ENSG00000196428.8531.80170349.699000.604704.022103.16180HepG2PABPC4
TSC22D2ENSG00000196428.8495.55360342.853800.531304.853504.17240HepG2PTBP1
TSC22D2ENSG00000196428.8294.91450368.24610-0.320401.897801.38670HepG2PUM1
TSC22D2ENSG00000196428.8537.35270367.982600.546104.278703.45590HepG2PUM2
TSC22D2ENSG00000196428.8537.43900371.254100.533604.416903.65380HepG2QKI
TSC22D2ENSG00000196428.8633.15990242.285701.3858010.795909.46810HepG2RAVER1
TSC22D2ENSG00000196428.8973.11430423.831001.1990025.7868024.52820HepG2RBM22
TSC22D2ENSG00000196428.8556.49450336.961500.723707.019005.98470HepG2RBM25
TSC22D2ENSG00000196428.8348.10410249.523400.480202.329701.42740HepG2RBM27
TSC22D2ENSG00000196428.8480.48000381.538000.332501.863301.40010HepG2NELFE
TSC22D2ENSG00000196428.8284.93020193.706800.556602.847502.22500HepG2RPS19
TSC22D2ENSG00000196428.8326.80620230.130000.505902.411801.66030HepG2RPS2
TSC22D2ENSG00000196428.8369.09550234.909300.651803.878202.58940HepG2RPS5
TSC22D2ENSG00000196428.8308.70850187.867900.716403.260502.41600HepG2RRP9
TSC22D2ENSG00000196428.8823.85680455.252700.855606.837605.74460HepG2SF3A3
TSC22D2ENSG00000196428.8764.31710484.935900.656306.003204.99730HepG2SF3B1
TSC22D2ENSG00000196428.8515.82030356.900300.531204.696203.95680HepG2SF3B4
TSC22D2ENSG00000196428.8342.55110262.613600.383302.266401.67460HepG2SMN1
TSC22D2ENSG00000196428.81473.18080478.698001.6216066.0573064.45060HepG2SRFBP1
TSC22D2ENSG00000196428.8820.70080521.808300.653204.431803.13580HepG2SRSF3
TSC22D2ENSG00000196428.8524.71430342.507500.615303.773003.06310HepG2SRSF5
TSC22D2ENSG00000196428.8541.25210389.534500.474404.093603.36260HepG2SUCLG1
TSC22D2ENSG00000196428.8618.54390477.562600.373102.139501.49000HepG2TARDBP
TSC22D2ENSG00000196428.8177.32390245.70430-0.470502.199601.74370HepG2TIAL1
TSC22D2ENSG00000196428.81545.98750410.114901.9143047.3553044.70480HepG2U2AF1
TSC22D2ENSG00000196428.81010.88160346.263401.545606.337204.77020HepG2U2AF2
TSC22D2ENSG00000196428.8732.75680389.793700.910507.746806.82550HepG2UTP3
TSC22D2ENSG00000196428.8398.56580266.427900.581002.781001.72330HepG2XRCC6
TSC22D2ENSG00000196428.8432.20540310.225900.478303.773103.00960HepG2ZC3H8
TSC22D2ENSG00000196428.8646.31190444.035700.541505.900305.17980HepG2ZNF622
TSC22D2ENSG00000196428.8357.05280242.023100.560902.663201.39560HepG2ZRANB2
TSC22D2ENSG00000196428.81022.61620770.832500.407703.227601.93850K562AARS
TSC22D2ENSG00000196428.83670.226101324.875801.4699073.0935070.22960K562AGGF1
TSC22D2ENSG00000196428.83711.079001378.632401.4285014.6365012.93740K562AKAP8L
TSC22D2ENSG00000196428.82199.278701359.982300.6933010.365009.33860K562AQR
TSC22D2ENSG00000196428.82163.135601446.591000.580403.401502.37870K562ATP5C1
TSC22D2ENSG00000196428.8560.07000681.94020-0.284002.209501.34950K562BCLAF1
TSC22D2ENSG00000196428.8621.73210905.45950-0.542405.676104.56050K562CPSF6
TSC22D2ENSG00000196428.8758.15170597.897300.342503.004901.62040K562DDX27
TSC22D2ENSG00000196428.82106.264301610.705400.386906.199105.27820K562DDX47
TSC22D2ENSG00000196428.82133.340601483.262300.524204.489103.33630K562DKC1
TSC22D2ENSG00000196428.8799.061101038.10190-0.377602.842401.98190K562FIP1L1
TSC22D2ENSG00000196428.8955.25090732.480500.383002.415901.37460K562FKBP4
TSC22D2ENSG00000196428.8592.42610921.28420-0.637006.373205.05520K562FMR1
TSC22D2ENSG00000196428.8587.37070780.87180-0.410802.659501.76380K562FTO
TSC22D2ENSG00000196428.8829.277201131.22190-0.448002.588301.99910K562FXR1
TSC22D2ENSG00000196428.81490.208301086.315300.456004.869802.90590K562G3BP1
TSC22D2ENSG00000196428.83255.898301096.058201.5706014.1106010.68220K562HNRNPA2B1
TSC22D2ENSG00000196428.8595.76560843.12620-0.501004.501403.75850K562HNRNPC
TSC22D2ENSG00000196428.81127.643801455.67200-0.368403.416702.22680K562HNRNPL
TSC22D2ENSG00000196428.81050.881201407.46490-0.421503.777202.85160K562HSPD1
TSC22D2ENSG00000196428.81519.151901136.158000.419002.846901.80270K562IGF2BP2
TSC22D2ENSG00000196428.83233.828601462.936701.144304.322703.26070K562KIF1C
TSC22D2ENSG00000196428.8638.28240855.42100-0.422403.077801.52420K562LIN28B
TSC22D2ENSG00000196428.8969.233701191.74260-0.298202.348601.50470K562MATR3
TSC22D2ENSG00000196428.83063.118201638.877700.902205.698104.30490K562MBNL1
TSC22D2ENSG00000196428.8579.14790843.83960-0.543005.061003.85690K562METAP2
TSC22D2ENSG00000196428.82684.508001148.746601.224503.966502.85560K562NAA15
TSC22D2ENSG00000196428.81394.625901756.88700-0.333102.946601.40630K562NOL12
TSC22D2ENSG00000196428.81094.258001331.21170-0.282803.612802.77270K562NSUN2
TSC22D2ENSG00000196428.82026.89150958.520101.080306.337504.65450K562PABPN1
TSC22D2ENSG00000196428.81312.126401650.28140-0.330803.095501.57870K562PNPT1
TSC22D2ENSG00000196428.8926.808901178.43140-0.346502.465101.69420K562PPIG
TSC22D2ENSG00000196428.81852.850701139.357200.701402.965401.44230K562PPP1R8
TSC22D2ENSG00000196428.8856.47790646.435300.405802.641101.90820K562PRPF8
TSC22D2ENSG00000196428.81415.096001864.16400-0.397604.807603.36980K562PUM1
TSC22D2ENSG00000196428.85811.054301366.945902.0877029.3817027.59090K562PUS1
TSC22D2ENSG00000196428.84436.223201332.114201.7355099.1175095.62440K562RBM15
TSC22D2ENSG00000196428.8466.49440689.93160-0.564605.039803.69910K562RCC2
TSC22D2ENSG00000196428.8870.01360658.415900.401902.188901.46650K562RPS19
TSC22D2ENSG00000196428.82146.97900876.464101.292407.937905.55710K562SF1
TSC22D2ENSG00000196428.81047.413701313.69740-0.326803.426402.52420K562SF3A3
TSC22D2ENSG00000196428.81216.94610960.520400.341302.136801.38620K562SF3B4
TSC22D2ENSG00000196428.81971.838801006.763000.969704.198602.57770K562SNRNP200
TSC22D2ENSG00000196428.81588.000701345.923200.238502.908401.95210K562SRPK2
TSC22D2ENSG00000196428.8625.673101137.35800-0.8622013.6728012.10180K562SRSF1
TSC22D2ENSG00000196428.8841.898401151.10310-0.451303.758802.92890K562TARDBP
TSC22D2ENSG00000196428.8892.011601110.36300-0.315902.551101.76870K562TIA1
TSC22D2ENSG00000196428.8460.31070727.11320-0.659605.535204.16850K562TIAL1
TSC22D2ENSG00000196428.81619.546501975.93650-0.286903.154201.64870K562UBE2L3
TSC22D2ENSG00000196428.81199.694801411.51900-0.234602.299301.64060K562UPF1
TSC22D2ENSG00000196428.8878.806801133.85240-0.367603.245901.41370K562UPF2
TSC22D2ENSG00000196428.8462.94280674.55560-0.543104.104302.51560K562XRN2
TSC22D2ENSG00000196428.82009.971201184.656900.762602.953201.30600K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TSC22D2 is not available on ENCORE database.





11 RBPs can affect the splicing of TSC22D2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETSC22D2ENSG00000196428.8chr3+1501408351501409071501261211501290951501748621501749140.117000.000360.08274includedK562PUM1
SETSC22D2ENSG00000196428.8chr3+1501559841501561411501408351501409071501748621501749140.529000.000130.00221includedK562AQR
SETSC22D2ENSG00000196428.8chr3+150140835150140907150126121150129095150174862150174914-0.088000.001440.01662excludedK562AQR
SETSC22D2ENSG00000196428.8chr3+150140835150140907150126121150129095150174862150174914-0.093000.000540.08993excludedK562HNRNPA1
SETSC22D2ENSG00000196428.8chr3+150174862150174914150126121150129095150176162150184218-0.142000.000040.00118excludedK562PUS1
SETSC22D2ENSG00000196428.8chr3+1501559841501561411501289651501290951501748621501749140.113000.003430.06092includedK562U2AF1
SETSC22D2ENSG00000196428.8chr3+1501559841501561411501289651501290951501748621501749140.163000.001080.09129includedHepG2LARP4
SETSC22D2ENSG00000196428.8chr3+1501559841501561411501289651501290951501748621501749140.204000.000380.08196includedK562PPIL4
SETSC22D2ENSG00000196428.8chr3+1501559841501561411501289651501290951501748621501749140.118000.001620.05426includedK562TARDBP
SETSC22D2ENSG00000196428.8chr3+1501559841501561411501289651501290951501748621501749140.102000.002850.08320includedK562HNRNPU
SETSC22D2ENSG00000196428.8chr3+150174862150174914150126121150129095150176162150184218-0.097000.005230.09636excludedK562AGGF1
SETSC22D2ENSG00000196428.8chr3+1501408351501409071501261211501290951501748621501749140.280000.000000.00002includedK562PTBP1
MXETSC22D2ENSG00000196428.8chr3+150140835150140907150155984150156141150128965150129095150174862150174914-0.329000.008130.089442includedK562U2AF1
MXETSC22D2ENSG00000196428.8chr3+150140835150140907150155996150156141150126121150129095150174862150174914-0.529000.000420.079632includedK562HNRNPA1
MXETSC22D2ENSG00000196428.8chr3+150140835150140907150155984150156141150128965150129095150174862150174914-0.523000.000050.017342includedK562HNRNPA1
MXETSC22D2ENSG00000196428.8chr3+150140835150140907150155984150156141150128965150129095150174862150174914-0.381000.000060.000732includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TSC22D2 is not avaliable on ENCORE database.