TSC22D2

General Information

Gene Name : TSC22D2
Gene ID : ENSG00000196428.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TSC22D2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TSC22D2	ENSG00000196428.12	11.79	9.43	10.61	ENCSR000AEF
HepG2	TSC22D2	ENSG00000196428.12	6.56	8.69	7.62	ENCSR985KAT
K562	TSC22D2	ENSG00000196428.12	17.75	19.68	18.71	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TSC22D2 is not avaliable on ENCORE database.

Proteins bound to RNA

TSC22D2 RNA is bound by 22 proteins.

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eCLIP assay for TSC22D2 is not avaliable on ENCORE database.

22 proteins are bound to TSC22D2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	150145549	150145640	+	intron-Distal	5.07922	38.64614	K562	PTBP1
chr3	150160035	150160129	+	intron-Distal	3.92671	16.52221	K562	QKI
chr3	150177101	150177154	+	3'-UTR	4.94783	15.39740	K562	PUM2
chr3	150127049	150127098	+	5'-UTR	4.21166	14.35009	K562	RBM15
chr3	150127790	150127803	+	CDS	5.68781	11.08775	K562	RBM15
chr3	150176152	150176226	+	3'-UTR,CDS,intron-Proximal	3.97339	10.83538	K562	GPKOW
chr3	150127941	150127984	+	CDS	5.66628	10.73550	K562	RBM15
chr3	150177062	150177101	+	3'-UTR	4.34460	10.61883	K562	PUM2
chr3	150127768	150127790	+	CDS	4.81879	10.40953	K562	RBM15
chr3	150128979	150129026	+	CDS	4.61708	9.72826	K562	RBM15
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 60 entries

eCLIP assay for TSC22D2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TSC22D2 is not available on ENCORE database.
90 RBPs can affect the levels of TSC22D2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TSC22D2 is not available on ENCORE database.

90 RBPs can affect the gene expression of TSC22D2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TSC22D2	ENSG00000196428.8	4436.22320	1332.11420	1.73550	99.11750	95.62440	K562	RBM15
TSC22D2	ENSG00000196428.8	3670.22610	1324.87580	1.46990	73.09350	70.22960	K562	AGGF1
TSC22D2	ENSG00000196428.8	1473.18080	478.69800	1.62160	66.05730	64.45060	HepG2	SRFBP1
TSC22D2	ENSG00000196428.8	1545.98750	410.11490	1.91430	47.35530	44.70480	HepG2	U2AF1
TSC22D2	ENSG00000196428.8	5811.05430	1366.94590	2.08770	29.38170	27.59090	K562	PUS1
TSC22D2	ENSG00000196428.8	973.11430	423.83100	1.19900	25.78680	24.52820	HepG2	RBM22
TSC22D2	ENSG00000196428.8	3711.07900	1378.63240	1.42850	14.63650	12.93740	K562	AKAP8L
TSC22D2	ENSG00000196428.8	625.67310	1137.35800	-0.86220	13.67280	12.10180	K562	SRSF1
TSC22D2	ENSG00000196428.8	3255.89830	1096.05820	1.57060	14.11060	10.68220	K562	HNRNPA2B1
TSC22D2	ENSG00000196428.8	580.28870	338.63000	0.77700	10.57200	9.54410	HepG2	ACO1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 99 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TSC22D2 is not available on ENCORE database.

11 RBPs can affect the splicing of TSC22D2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TSC22D2	ENSG00000196428.8	chr3	+	150140835	150140907			150126121	150129095	150174862	150174914	0.28000	0.00000	0.00002	included	K562	PTBP1
SE	TSC22D2	ENSG00000196428.8	chr3	+	150174862	150174914			150126121	150129095	150176162	150184218	-0.14200	0.00004	0.00118	excluded	K562	PUS1
MXE	TSC22D2	ENSG00000196428.8	chr3	+	150140835	150140907	150155984	150156141	150128965	150129095	150174862	150174914	-0.52300	0.00005	0.01734	2included	K562	HNRNPA1
MXE	TSC22D2	ENSG00000196428.8	chr3	+	150140835	150140907	150155984	150156141	150128965	150129095	150174862	150174914	-0.38100	0.00006	0.00073	2included	K562	AQR
SE	TSC22D2	ENSG00000196428.8	chr3	+	150155984	150156141			150140835	150140907	150174862	150174914	0.52900	0.00013	0.00221	included	K562	AQR
SE	TSC22D2	ENSG00000196428.8	chr3	+	150140835	150140907			150126121	150129095	150174862	150174914	0.11700	0.00036	0.08274	included	K562	PUM1
SE	TSC22D2	ENSG00000196428.8	chr3	+	150155984	150156141			150128965	150129095	150174862	150174914	0.20400	0.00038	0.08196	included	K562	PPIL4
MXE	TSC22D2	ENSG00000196428.8	chr3	+	150140835	150140907	150155996	150156141	150126121	150129095	150174862	150174914	-0.52900	0.00042	0.07963	2included	K562	HNRNPA1
SE	TSC22D2	ENSG00000196428.8	chr3	+	150140835	150140907			150126121	150129095	150174862	150174914	-0.09300	0.00054	0.08993	excluded	K562	HNRNPA1
SE	TSC22D2	ENSG00000196428.8	chr3	+	150155984	150156141			150128965	150129095	150174862	150174914	0.16300	0.00108	0.09129	included	HepG2	LARP4

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TSC22D2

General Information

Functions

Localization

Domains (AlphaFold: TSC22D2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TSC22D2 is not avaliable on ENCORE database.

22 proteins are bound to TSC22D2 RNA:

eCLIP assay for TSC22D2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TSC22D2 is not available on ENCORE database.

90 RBPs can affect the gene expression of TSC22D2 :

The Knockdown/knockout RNA-Seq assay for TSC22D2 is not available on ENCORE database.

11 RBPs can affect the splicing of TSC22D2 :

The Knockdown/knockout RNA-Seq assay for TSC22D2 is not avaliable on ENCORE database.