TMEM87B

General Information

Gene Name       : TMEM87B
Gene ID             : ENSG00000153214.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM87B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM87BENSG00000153214.1016.2412.3014.27ENCSR000AEF
HepG2TMEM87BENSG00000153214.108.4412.4810.46ENCSR985KAT
K562TMEM87BENSG00000153214.109.079.719.39ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM87B is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM87B RNA is bound by 12 proteins.  







eCLIP assay for TMEM87B is not avaliable on ENCORE database.





12 proteins are bound to TMEM87B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2112875463112875507+3'-UTR4.029455.24353K562UPF1
chr2112838636112838683+3'-UTR,CDS3.091703.18789HepG2BCLAF1
chr2112838937112838993+3'-UTR,CDS3.203703.94979HepG2BCLAF1
chr2112874297112874395+3'-UTR4.619595.93974HepG2UPF1
chr2112875281112875332+3'-UTR3.491913.77931K562UPF1
chr2112874579112874681+3'-UTR4.164684.21977HepG2HNRNPL
chr2112874746112874798+3'-UTR4.732565.29571HepG2FUBP3
chr2112875011112875038+3'-UTR4.252893.54010K562UPF1
chr2112838948112838994+3'-UTR,CDS4.056483.31432HepG2SND1
chr2112875443112875532+3'-UTR4.292443.93054HepG2LIN28B
chr2112874441112874542+3'-UTR4.507807.71647HepG2FAM120A
chr2112874340112874391+3'-UTR5.148808.17882K562FAM120A
chr2112874877112874948+3'-UTR4.885064.44205K562PUM2
chr2112875377112875440+3'-UTR4.067286.00093K562FAM120A
chr2112875507112875581+3'-UTR5.510188.80636K562UPF1
chr2112821738112821830+CDS,intron-Proximal3.736786.60490HepG2BCLAF1
chr2112843613112843682+CDS,intron-Proximal4.180443.19000HepG2SND1
chr2112858197112858214+CDS,intron-Distal,intron-Proximal3.080343.55800HepG2BCLAF1
chr2112843623112843683+CDS,intron-Proximal3.327745.58370HepG2PPIG
chr2112858220112858273+CDS,intron-Distal,intron-Proximal4.030345.65086HepG2BCLAF1
chr2112847254112847293+CDS4.491344.34038HepG2BCLAF1
chr2112817573112817613+CDS4.261623.02457HepG2BCLAF1
chr2112863575112863644+CDS,intron-Distal,intron-Proximal3.102544.51709HepG2BCLAF1
chr2112847201112847296+CDS,intron-Proximal4.528185.24633HepG2SND1
chr2112858198112858272+CDS,intron-Distal,intron-Proximal4.466164.84481HepG2PPIG
chr2112867354112867420+intron-Distal3.953773.79098HepG2SUGP2
chr2112858434112858670+intron-Distal4.031858.11145K562KHSRP
chr2112850643112850693+intron-Distal3.909343.09122HepG2PTBP1
chr2112867953112868077+intron-Distal3.609103.02234K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM87B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM87B is not available on ENCORE database.

  • 115 RBPs can affect the levels of TMEM87B.  








The Knockdown/knockout RNA-Seq assay for TMEM87B is not available on ENCORE database.





115 RBPs can affect the gene expression of TMEM87B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM87BENSG00000153214.51330.74330990.095600.426503.518002.84690HepG2ACO1
TMEM87BENSG00000153214.5856.709801127.56590-0.396302.964201.93420HepG2ADAR
TMEM87BENSG00000153214.52476.566001743.603600.506204.191803.55600HepG2AKAP1
TMEM87BENSG00000153214.51212.51520994.834600.285402.942002.15240HepG2AKAP8L
TMEM87BENSG00000153214.51929.340301299.238400.5703011.9460010.69590HepG2AUH
TMEM87BENSG00000153214.5693.885301293.24700-0.898203.010502.38910HepG2BOP1
TMEM87BENSG00000153214.51210.01260878.744100.461404.609903.03540HepG2BUD13
TMEM87BENSG00000153214.52429.668801168.230401.0563028.7821026.83500HepG2CALR
TMEM87BENSG00000153214.5762.15230989.98530-0.377304.787303.95800HepG2CKAP4
TMEM87BENSG00000153214.51263.84990965.878500.387803.331102.11650HepG2CPSF7
TMEM87BENSG00000153214.51782.515001463.040700.284803.023802.35700HepG2CELF1
TMEM87BENSG00000153214.51324.122401573.30420-0.248803.324802.52540HepG2DAZAP1
TMEM87BENSG00000153214.51093.79770896.504700.286902.086501.30380HepG2DDX24
TMEM87BENSG00000153214.53245.151401670.307000.9581015.7247014.35800HepG2DDX3X
TMEM87BENSG00000153214.51562.40330883.777700.821908.653507.36880HepG2DDX55
TMEM87BENSG00000153214.51852.605901434.671200.368702.419301.83800HepG2DDX6
TMEM87BENSG00000153214.5783.96300947.28030-0.273001.905201.32670HepG2DKC1
TMEM87BENSG00000153214.5883.006301125.38270-0.349904.668703.85730HepG2DNAJC2
TMEM87BENSG00000153214.51360.49330843.620200.689405.932204.31910HepG2AGO1
TMEM87BENSG00000153214.51761.264501379.340100.352502.474901.91240HepG2EIF2S1
TMEM87BENSG00000153214.5680.60590889.72940-0.386503.149501.89640HepG2EIF2S2
TMEM87BENSG00000153214.51243.93690815.021900.609906.084704.77990HepG2EIF3D
TMEM87BENSG00000153214.5799.303601016.02730-0.346102.348401.33930HepG2ESF1
TMEM87BENSG00000153214.52738.252301491.693200.8762029.9086028.29850HepG2ETF1
TMEM87BENSG00000153214.5596.16690819.62370-0.459203.236401.34750HepG2EXOSC9
TMEM87BENSG00000153214.52372.265001184.387201.0020014.0915012.56730HepG2FIP1L1
TMEM87BENSG00000153214.51111.19430872.775000.348302.666701.89560HepG2FUBP3
TMEM87BENSG00000153214.51203.347101537.83600-0.353802.470801.81610HepG2FXR1
TMEM87BENSG00000153214.5532.60800725.67290-0.446203.065702.11870HepG2GEMIN5
TMEM87BENSG00000153214.51384.410401098.717500.333402.366601.42780HepG2GNB2L1
TMEM87BENSG00000153214.51226.33110945.321500.375404.853503.59560HepG2HDGF
TMEM87BENSG00000153214.51841.308601169.759000.654403.721302.09730HepG2HLTF
TMEM87BENSG00000153214.5582.864801146.27840-0.9757015.5833014.25320HepG2HNRNPA1
TMEM87BENSG00000153214.52324.127201445.826600.6847016.9808015.05640HepG2HNRNPA2B1
TMEM87BENSG00000153214.5867.009901102.81480-0.347103.488502.69110HepG2HNRNPF
TMEM87BENSG00000153214.5981.786801444.37110-0.557005.708604.73390HepG2HNRNPK
TMEM87BENSG00000153214.51238.279801433.21320-0.210902.557901.90820HepG2HNRNPL
TMEM87BENSG00000153214.5876.142901266.59550-0.531708.926607.88550HepG2HNRNPU
TMEM87BENSG00000153214.5778.028601085.96810-0.481104.780903.85400HepG2IGF2BP1
TMEM87BENSG00000153214.5966.662201293.78490-0.420507.060805.94620HepG2ILF2
TMEM87BENSG00000153214.51121.764501538.37190-0.455603.602202.85340HepG2MAGOH
TMEM87BENSG00000153214.51702.51560958.494400.8287014.1602012.48190HepG2MSI2
TMEM87BENSG00000153214.51063.169301560.07580-0.553205.177204.13920HepG2NOL12
TMEM87BENSG00000153214.5866.276601797.04370-1.052703.426601.38250HepG2NUFIP2
TMEM87BENSG00000153214.52009.232101410.339900.510504.713903.78300HepG2PABPC4
TMEM87BENSG00000153214.51554.630001253.709400.310303.739002.77190HepG2PARN
TMEM87BENSG00000153214.5789.602001129.70150-0.516706.982705.85140HepG2PPIL4
TMEM87BENSG00000153214.51032.62660681.705500.599005.085304.02440HepG2PRPF8
TMEM87BENSG00000153214.51169.473601489.17990-0.348703.199802.56500HepG2PUF60
TMEM87BENSG00000153214.52528.439901580.772900.6775023.7280022.33770HepG2PUM1
TMEM87BENSG00000153214.52093.889501579.653900.406504.835503.96180HepG2PUM2
TMEM87BENSG00000153214.5814.836901008.49200-0.307602.492801.89990HepG2PUS1
TMEM87BENSG00000153214.51659.013401296.852200.355203.642802.67320HepG2RBM15
TMEM87BENSG00000153214.51698.723601246.780800.446106.093805.39860HepG2RBM22
TMEM87BENSG00000153214.51754.800601375.760200.351003.450102.70330HepG2RBM25
TMEM87BENSG00000153214.5792.391601297.58010-0.711504.857703.52470HepG2RBM27
TMEM87BENSG00000153214.5754.952501053.68740-0.481002.392901.40830HepG2RCC2
TMEM87BENSG00000153214.51317.704501557.72610-0.241402.246001.74840HepG2NELFE
TMEM87BENSG00000153214.51227.569801450.88750-0.241102.283401.71710HepG2RECQL
TMEM87BENSG00000153214.5630.57150793.05150-0.330802.237001.67860HepG2RPS19
TMEM87BENSG00000153214.5950.81490674.342200.495603.257002.41310HepG2RRP9
TMEM87BENSG00000153214.5718.021801749.01220-1.284404.858102.96470HepG2SF1
TMEM87BENSG00000153214.5824.716101457.21090-0.8212018.8094017.48410HepG2SF3B4
TMEM87BENSG00000153214.52487.291701414.884600.813806.476505.27110HepG2SNRNP70
TMEM87BENSG00000153214.53108.841001408.195301.1424058.6782057.13840HepG2SRFBP1
TMEM87BENSG00000153214.51184.661101521.05030-0.360604.724704.14880HepG2SRSF1
TMEM87BENSG00000153214.51831.032801470.279500.316502.470101.87400HepG2SRSF5
TMEM87BENSG00000153214.51431.906501237.487800.210402.112901.61730HepG2SRSF9
TMEM87BENSG00000153214.51094.63250791.026800.468502.700301.47600HepG2STAU1
TMEM87BENSG00000153214.51846.372501042.825600.824107.018205.15180HepG2SUB1
TMEM87BENSG00000153214.51477.547501672.17170-0.178501.994301.44990HepG2SUCLG1
TMEM87BENSG00000153214.51363.26610799.693900.7694011.8563010.04180HepG2SUPT6H
TMEM87BENSG00000153214.51405.35500879.770400.675606.127805.18020HepG2SUPV3L1
TMEM87BENSG00000153214.51771.667101367.283600.373704.823704.11610HepG2TAF15
TMEM87BENSG00000153214.5967.27630589.669100.713906.642005.21290HepG2TFIP11
TMEM87BENSG00000153214.5750.441401230.72440-0.7137011.4527010.55820HepG2TIAL1
TMEM87BENSG00000153214.51999.292901539.791700.376702.424201.64430HepG2UBE2L3
TMEM87BENSG00000153214.51357.90780988.700700.457707.474706.41950HepG2UPF1
TMEM87BENSG00000153214.5550.70600954.55360-0.7935014.1942012.99840HepG2UTP3
TMEM87BENSG00000153214.51727.922801097.040800.655304.792303.11940HepG2XRCC5
TMEM87BENSG00000153214.5562.81560866.03800-0.621805.253704.26370HepG2XRN2
TMEM87BENSG00000153214.51993.766201087.383300.8745033.2749031.91940HepG2ZNF622
TMEM87BENSG00000153214.5253.44790802.10000-1.6621040.2471038.13040K562AGGF1
TMEM87BENSG00000153214.5343.68630489.97520-0.511604.548702.57380K562AKAP1
TMEM87BENSG00000153214.5669.76780881.36260-0.396103.009501.97270K562AKAP8
TMEM87BENSG00000153214.5494.03200834.61550-0.756508.620607.40180K562AKAP8L
TMEM87BENSG00000153214.5464.546901027.10600-1.1447017.1373015.84040K562AQR
TMEM87BENSG00000153214.5621.07800875.70140-0.495705.431304.09960K562ATP5C1
TMEM87BENSG00000153214.5858.10790675.664600.344802.096201.34260K562BOP1
TMEM87BENSG00000153214.5607.370501083.01100-0.834405.550403.98620K562CNOT7
TMEM87BENSG00000153214.5524.14970718.43870-0.454903.677602.77450K562CPSF6
TMEM87BENSG00000153214.51188.93880937.379500.342903.810103.06260K562DDX47
TMEM87BENSG00000153214.5531.09220898.14330-0.7580012.019509.93580K562DKC1
TMEM87BENSG00000153214.5867.74310664.938400.383903.652302.84570K562EIF2S2
TMEM87BENSG00000153214.5357.41560467.03200-0.385902.637901.52100K562EIF4B
TMEM87BENSG00000153214.5337.91610452.69550-0.421902.741101.46020K562EWSR1
TMEM87BENSG00000153214.5666.14670432.250800.623904.868103.30420K562FKBP4
TMEM87BENSG00000153214.51279.25100730.968300.8073010.569708.84300K562FMR1
TMEM87BENSG00000153214.51025.45550619.550300.726902.971302.02250K562FTO
TMEM87BENSG00000153214.5545.26410759.84190-0.478703.824702.10970K562G3BP1
TMEM87BENSG00000153214.5660.56460886.06130-0.423703.484102.63810K562GRSF1
TMEM87BENSG00000153214.5440.58290625.26670-0.505104.207502.88290K562HNRNPA1
TMEM87BENSG00000153214.5443.61450884.46370-0.995502.968301.69480K562HNRNPA2B1
TMEM87BENSG00000153214.5683.34980498.231200.455703.491502.83150K562HNRNPC
TMEM87BENSG00000153214.5492.01300847.07130-0.783806.355904.69260K562HNRNPL
TMEM87BENSG00000153214.5397.38980576.74810-0.537403.367202.33260K562HNRNPM
TMEM87BENSG00000153214.5502.88490692.41420-0.461404.316803.19150K562HNRNPU
TMEM87BENSG00000153214.5659.13530885.75650-0.426303.521202.57980K562KIF1C
TMEM87BENSG00000153214.5585.59910847.87000-0.533904.383402.93870K562MAK16
TMEM87BENSG00000153214.5701.90500992.26810-0.499505.028403.73060K562MBNL1
TMEM87BENSG00000153214.5876.44120669.552300.388402.970102.06080K562METAP2
TMEM87BENSG00000153214.5447.11120695.50620-0.637403.995202.87840K562NAA15
TMEM87BENSG00000153214.5356.56250774.17200-1.118503.052302.00180K562PABPN1
TMEM87BENSG00000153214.5498.50150743.26380-0.576305.094103.75740K562PCBP2
TMEM87BENSG00000153214.5375.17170493.57470-0.395701.951901.31500K562PRPF8
TMEM87BENSG00000153214.5534.65310811.50360-0.602006.465205.48490K562PTBP1
TMEM87BENSG00000153214.51688.572301324.870600.349902.635801.59680K562PUM1
TMEM87BENSG00000153214.5416.40080827.75210-0.9912012.1125011.02250K562PUS1
TMEM87BENSG00000153214.5435.90280806.48450-0.8876013.2935011.98870K562RBM15
TMEM87BENSG00000153214.5590.75450778.33680-0.397802.764201.92430K562RBM22
TMEM87BENSG00000153214.5472.40350952.50840-1.011702.949901.34990K562RBM39
TMEM87BENSG00000153214.5302.96680407.43270-0.427402.193401.31430K562RCC2
TMEM87BENSG00000153214.5500.19980341.840900.549103.134902.06080K562RPS3
TMEM87BENSG00000153214.5629.75590986.44250-0.647403.776501.92400K562SBDS
TMEM87BENSG00000153214.5272.50850708.29760-1.378104.004402.48160K562SF1
TMEM87BENSG00000153214.5926.13460710.126900.383002.019601.31570K562SF3A3
TMEM87BENSG00000153214.5929.88090652.316900.511403.529402.42650K562SF3B1
TMEM87BENSG00000153214.5294.49760574.20350-0.963307.370905.93100K562SF3B4
TMEM87BENSG00000153214.5411.31530812.97370-0.983002.834601.58980K562SNRNP200
TMEM87BENSG00000153214.5526.90440751.18970-0.511602.947601.85750K562SRSF5
TMEM87BENSG00000153214.5636.71140477.913700.413802.345801.41440K562SUPV3L1
TMEM87BENSG00000153214.5574.05680776.67310-0.436103.613902.65940K562TIA1
TMEM87BENSG00000153214.5571.14600761.93580-0.415802.353601.36320K562TRA2A
TMEM87BENSG00000153214.51090.91480763.060900.515607.672406.55030K562UPF1
TMEM87BENSG00000153214.51580.864701157.088300.450104.573703.42240K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM87B is not available on ENCORE database.





5 RBPs can affect the splicing of TMEM87B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM87BENSG00000153214.5chr2+112870475112870506112865364112865417112873660112876895-0.127000.001010.01430excludedHepG2U2AF2
SETMEM87BENSG00000153214.5chr2+1128347681128348591128245121128246441128386331128386950.133000.000140.01650includedHepG2DDX3X
SETMEM87BENSG00000153214.5chr2+112832488112832539112824512112824644112834768112834859-0.267000.001030.02789excludedK562RBM15
MXETMEM87BENSG00000153214.5chr2+1128324881128325391128347681128348591128245121128246441128386331128386950.214000.001370.071021includedK562LARP4
MXETMEM87BENSG00000153214.5chr2+112849288112849360112852804112852876112847201112847295112854620112854729-0.303000.000030.001982includedK562PTBP1
MXETMEM87BENSG00000153214.5chr2+112849288112849360112852804112852876112847201112847295112854620112854729-0.141000.000010.001402includedHepG2PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM87B is not avaliable on ENCORE database.