TMEM87B

General Information

Gene Name : TMEM87B
Gene ID : ENSG00000153214.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TMEM87B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TMEM87B	ENSG00000153214.10	16.24	12.30	14.27	ENCSR000AEF
HepG2	TMEM87B	ENSG00000153214.10	8.44	12.48	10.46	ENCSR985KAT
K562	TMEM87B	ENSG00000153214.10	9.07	9.71	9.39	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TMEM87B is not avaliable on ENCORE database.

Proteins bound to RNA

TMEM87B RNA is bound by 12 proteins.

CanvasJS.com

eCLIP assay for TMEM87B is not avaliable on ENCORE database.

12 proteins are bound to TMEM87B RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	112875507	112875581	+	3'-UTR	5.51018	8.80636	K562	UPF1
chr2	112874340	112874391	+	3'-UTR	5.14880	8.17882	K562	FAM120A
chr2	112858434	112858670	+	intron-Distal	4.03185	8.11145	K562	KHSRP
chr2	112874441	112874542	+	3'-UTR	4.50780	7.71647	HepG2	FAM120A
chr2	112821738	112821830	+	CDS,intron-Proximal	3.73678	6.60490	HepG2	BCLAF1
chr2	112875377	112875440	+	3'-UTR	4.06728	6.00093	K562	FAM120A
chr2	112874297	112874395	+	3'-UTR	4.61959	5.93974	HepG2	UPF1
chr2	112858220	112858273	+	CDS,intron-Distal,intron-Proximal	4.03034	5.65086	HepG2	BCLAF1
chr2	112843623	112843683	+	CDS,intron-Proximal	3.32774	5.58370	HepG2	PPIG
chr2	112874746	112874798	+	3'-UTR	4.73256	5.29571	HepG2	FUBP3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 29 entries

eCLIP assay for TMEM87B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TMEM87B is not available on ENCORE database.
115 RBPs can affect the levels of TMEM87B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TMEM87B is not available on ENCORE database.

115 RBPs can affect the gene expression of TMEM87B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TMEM87B	ENSG00000153214.5	3108.84100	1408.19530	1.14240	58.67820	57.13840	HepG2	SRFBP1
TMEM87B	ENSG00000153214.5	253.44790	802.10000	-1.66210	40.24710	38.13040	K562	AGGF1
TMEM87B	ENSG00000153214.5	1993.76620	1087.38330	0.87450	33.27490	31.91940	HepG2	ZNF622
TMEM87B	ENSG00000153214.5	2738.25230	1491.69320	0.87620	29.90860	28.29850	HepG2	ETF1
TMEM87B	ENSG00000153214.5	2429.66880	1168.23040	1.05630	28.78210	26.83500	HepG2	CALR
TMEM87B	ENSG00000153214.5	2528.43990	1580.77290	0.67750	23.72800	22.33770	HepG2	PUM1
TMEM87B	ENSG00000153214.5	824.71610	1457.21090	-0.82120	18.80940	17.48410	HepG2	SF3B4
TMEM87B	ENSG00000153214.5	464.54690	1027.10600	-1.14470	17.13730	15.84040	K562	AQR
TMEM87B	ENSG00000153214.5	2324.12720	1445.82660	0.68470	16.98080	15.05640	HepG2	HNRNPA2B1
TMEM87B	ENSG00000153214.5	3245.15140	1670.30700	0.95810	15.72470	14.35800	HepG2	DDX3X
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 135 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TMEM87B is not available on ENCORE database.

5 RBPs can affect the splicing of TMEM87B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	TMEM87B	ENSG00000153214.5	chr2	+	112849288	112849360	112852804	112852876	112847201	112847295	112854620	112854729	-0.14100	0.00001	0.00140	2included	HepG2	PTBP1
MXE	TMEM87B	ENSG00000153214.5	chr2	+	112849288	112849360	112852804	112852876	112847201	112847295	112854620	112854729	-0.30300	0.00003	0.00198	2included	K562	PTBP1
SE	TMEM87B	ENSG00000153214.5	chr2	+	112834768	112834859			112824512	112824644	112838633	112838695	0.13300	0.00014	0.01650	included	HepG2	DDX3X
SE	TMEM87B	ENSG00000153214.5	chr2	+	112870475	112870506			112865364	112865417	112873660	112876895	-0.12700	0.00101	0.01430	excluded	HepG2	U2AF2
SE	TMEM87B	ENSG00000153214.5	chr2	+	112832488	112832539			112824512	112824644	112834768	112834859	-0.26700	0.00103	0.02789	excluded	K562	RBM15
MXE	TMEM87B	ENSG00000153214.5	chr2	+	112832488	112832539	112834768	112834859	112824512	112824644	112838633	112838695	0.21400	0.00137	0.07102	1included	K562	LARP4

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TMEM87B

General Information

Functions

Localization

Domains (AlphaFold: TMEM87B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TMEM87B is not avaliable on ENCORE database.

12 proteins are bound to TMEM87B RNA:

eCLIP assay for TMEM87B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TMEM87B is not available on ENCORE database.

115 RBPs can affect the gene expression of TMEM87B :

The Knockdown/knockout RNA-Seq assay for TMEM87B is not available on ENCORE database.

5 RBPs can affect the splicing of TMEM87B :

The Knockdown/knockout RNA-Seq assay for TMEM87B is not avaliable on ENCORE database.