SNHG7

General Information

Gene Name       : SNHG7
Gene ID             : ENSG00000233016.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNHG7)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNHG7ENSG00000233016.62.915.944.43ENCSR000AEF
HepG2SNHG7ENSG00000233016.622.6113.3117.96ENCSR985KAT
K562SNHG7ENSG00000233016.614.627.9211.27ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNHG7 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNHG7 RNA is bound by 27 proteins.  







eCLIP assay for SNHG7 is not avaliable on ENCORE database.





27 proteins are bound to SNHG7 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9139621457139621500-intron-Distal,intron-Proximal5.7444910.58731HepG2AQR
chr9139620637139620650-intron-Distal4.17478400.00000HepG2DKC1
chr9139621231139621236-intron-Distal4.97109400.00000HepG2DKC1
chr9139621205139621227-intron-Distal4.11545400.00000K562AATF
chr9139621238139621265-intron-Distal4.16146400.00000HepG2NOLC1
chr9139622349139622435-intron-Distal5.2786320.60699HepG2GRSF1
chr9139621289139621299-intron-Distal3.15560400.00000HepG2NOLC1
chr9139621236139621259-intron-Distal4.10007400.00000K562AATF
chr9139621042139621139-intron-Distal3.250343.17878HepG2FUS
chr9139622410139622482-intron-Distal3.063717.64735K562DDX24
chr9139619488139619563-intron-Distal,intron-Proximal5.020908.28148HepG2UPF1
chr9139622292139622360-intron-Distal3.029375.13885HepG2PRPF8
chr9139619550139619564-intron-Distal,intron-Proximal3.767188.74774HepG2PPIG
chr9139617116139617176-intron-Distal4.438244.61649HepG2CSTF2T
chr9139620716139620785-intron-Distal,intron-Proximal4.0750118.94746HepG2PRPF8
chr9139621236139621240-intron-Distal4.95021400.00000HepG2DKC1
chr9139620915139620989-intron-Distal,intron-Proximal3.254533.22032K562FUS
chr9139620569139620579-intron-Distal4.10611400.00000HepG2DKC1
chr9139622435139622503-intron-Distal3.131989.08978HepG2GRSF1
chr9139620724139620783-intron-Distal,intron-Proximal4.423229.25403HepG2AQR
chr9139621243139621256-intron-Distal5.00950400.00000HepG2DKC1
chr9139619403139619461-intron-Distal,intron-Proximal3.841724.00430HepG2UPF1
chr9139622331139622403-intron-Distal3.104375.95627K562RBM15
chr9139620816139620900-intron-Distal,intron-Proximal4.2589522.37230K562AQR
chr9139621460139621502-intron-Distal,intron-Proximal3.0756910.39638HepG2BUD13
chr9139620874139620954-intron-Distal,intron-Proximal4.444405.07796HepG2SF3B4
chr9139621272139621275-intron-Distal5.50798400.00000HepG2DKC1
chr9139621491139621498-intron-Distal,intron-Proximal5.4326242.65531K562AQR
chr9139620716139620747-intron-Distal,intron-Proximal3.4463613.30490K562AQR
chr9139621219139621222-intron-Distal4.50493400.00000HepG2NOLC1
chr9139621465139621548-intron-Distal,intron-Proximal3.6371117.35738K562BUD13
chr9139619513139619618-intron-Distal,intron-Proximal4.1679610.49952HepG2AQR
chr9139619506139619566-intron-Distal,intron-Proximal3.105795.56310HepG2PRPF8
chr9139621291139621329-intron-Distal4.80320400.00000HepG2DKC1
chr9139621222139621253-intron-Distal3.75015400.00000K562PHF6
chr9139621198139621217-intron-Distal5.06913400.00000HepG2DKC1
chr9139621502139621549-intron-Distal,intron-Proximal3.0759012.91507HepG2BUD13
chr9139621453139621504-intron-Distal,intron-Proximal4.069947.89388HepG2PRPF8
chr9139621240139621243-intron-Distal4.94336400.00000HepG2DKC1
chr9139621199139621219-intron-Distal4.28940400.00000HepG2NOLC1
chr9139621228139621236-intron-Distal4.27364400.00000K562AATF
chr9139621259139621272-intron-Distal3.98686400.00000K562AATF
chr9139621266139621272-intron-Distal5.37223400.00000HepG2DKC1
chr9139620796139620850-intron-Distal3.393704.50819HepG2AQR
chr9139621470139621541-intron-Distal,intron-Proximal3.401657.59302K562SRSF1
chr9139621223139621231-intron-Distal3.94380400.00000HepG2NOLC1
chr9139621271139621326-intron-Distal3.162187.85614K562NIPBL
chr9139620799139620861-intron-Distal3.792703.47885K562LIN28B
chr9139620185139620266-intron-Distal4.451845.50415K562FUS
chr9139620662139620691-intron-Distal,intron-Proximal4.63717400.00000HepG2DKC1
chr9139621304139621319-intron-Distal3.3394254.25485K562AATF
chr9139619165139619265-intron-Distal4.537158.11444HepG2SUB1
chr9139619411139619464-intron-Distal,intron-Proximal3.126523.52299HepG2AKAP1
chr9139622332139622403-intron-Distal4.772286.85535K562SRSF1
chr9139621524139621533-intron-Distal3.292564.38107K562AQR
chr9139621254139621274-intron-Distal3.60457400.00000K562PHF6
chr9139620579139620589-intron-Distal3.88992400.00000HepG2DKC1
chr9139622521139622633-intron-Distal4.0656115.15746HepG2DDX3X
chr9139622401139622517-intron-Distal3.5859526.42872K562GEMIN5
chr9139619514139619594-intron-Distal,intron-Proximal3.1349910.79352HepG2BUD13
chr9139619509139619563-intron-Distal,intron-Proximal3.490644.56702HepG2SRSF1
chr9139619521139619568-intron-Distal,intron-Proximal3.119735.48629K562BUD13
chr9139619505139619550-intron-Distal,intron-Proximal3.956438.46997HepG2PPIG
chr9139621275139621287-intron-Distal5.25180400.00000HepG2DKC1
chr9139622298139622337-intron-Distal4.367473.95187HepG2AQR
chr9139621231139621238-intron-Distal4.18399400.00000HepG2NOLC1
chr9139622351139622388-intron-Distal3.271984.00968HepG2DDX3X
chr9139619215139619269-intron-Distal3.135016.97179HepG2LARP4
chr9139620762139620856-intron-Distal,intron-Proximal4.0404916.65240HepG2PPIG
chr9139620614139620637-intron-Distal4.05575400.00000HepG2DKC1
chr9139621285139621304-intron-Distal3.4869170.85642K562AATF
chr9139621287139621300-intron-Distal3.3837045.93945K562PHF6
chr9139620650139620662-intron-Distal4.32930400.00000HepG2DKC1
chr9139621273139621285-intron-Distal3.74154400.00000K562AATF
chr9139621224139621267-intron-Distal3.0526755.61847K562UTP18
chr9139620597139620603-intron-Distal4.07674400.00000HepG2DKC1
chr9139620589139620597-intron-Distal3.89192400.00000HepG2DKC1
chr9139621508139621561-intron-Distal,intron-Proximal4.618725.32906HepG2AQR
chr9139621262139621265-intron-Distal5.31572400.00000HepG2DKC1
chr9139619178139619269-intron-Distal3.056563.46769K562YBX3
chr9139619518139619590-intron-Distal,intron-Proximal3.238637.13900K562AQR
chr9139620605139620610-intron-Distal4.05610400.00000HepG2DKC1
chr9139620610139620614-intron-Distal4.16628400.00000HepG2DKC1
chr9139621442139621456-intron-Distal,intron-Proximal4.114678.29266K562AQR
chr9139621257139621262-intron-Distal5.23606400.00000HepG2DKC1
chr9139622291139622333-intron-Distal4.234826.77156K562AQR
chr9139621456139621491-intron-Distal,intron-Proximal5.3657848.27161K562AQR
chr9139620989139621103-intron-Distal,intron-Proximal3.540497.22029K562FUS
chr9139619287139619355-intron-Distal4.295033.98590HepG2AKAP1
chr9139619305139619363-intron-Distal4.352495.07111HepG2UPF1
chr9139621204139621271-intron-Distal4.7377927.05156K562NIPBL
chr9139622529139622635-intron-Distal4.4520320.58735HepG2NCBP2
chr9139621015139621080-intron-Distal,intron-Proximal3.042945.96311K562TAF15
chr9139621221139621231-intron-Distal5.03127400.00000HepG2DKC1
chr9139620850139620905-intron-Distal,intron-Proximal4.355938.60557HepG2AQR
chr9139621287139621291-intron-Distal5.29543400.00000HepG2DKC1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNHG7 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNHG7 is not available on ENCORE database.

  • 98 RBPs can affect the levels of SNHG7.  








The Knockdown/knockout RNA-Seq assay for SNHG7 is not available on ENCORE database.





98 RBPs can affect the gene expression of SNHG7 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNHG7ENSG00000233016.2154.37660320.71290-1.054806.299905.45870HepG2ACO1
SNHG7ENSG00000233016.2150.21210757.27950-2.3338014.1176013.01370HepG2AKAP1
SNHG7ENSG00000233016.2222.52840322.13980-0.533702.738901.97560HepG2AKAP8L
SNHG7ENSG00000233016.2288.67250626.52440-1.117905.916304.79010HepG2ASCC1
SNHG7ENSG00000233016.2316.04210511.54580-0.694707.120006.10070HepG2AUH
SNHG7ENSG00000233016.2153.33110234.69650-0.614103.085501.78580HepG2BUD13
SNHG7ENSG00000233016.2108.76600181.70520-0.740403.220102.39400HepG2CALR
SNHG7ENSG00000233016.2254.87800367.38220-0.527502.325501.43930HepG2CCAR1
SNHG7ENSG00000233016.2166.80860450.85080-1.4345011.347809.83710HepG2CNOT7
SNHG7ENSG00000233016.2195.31570125.064300.643002.111901.50210HepG2CPSF6
SNHG7ENSG00000233016.2297.16740192.310100.627704.064802.82950HepG2YBX3
SNHG7ENSG00000233016.2244.58290344.82060-0.495503.350202.65660HepG2CELF1
SNHG7ENSG00000233016.2478.75920370.847300.368402.444801.74240HepG2DAZAP1
SNHG7ENSG00000233016.2298.89180725.28600-1.278906.691905.76100HepG2DDX3X
SNHG7ENSG00000233016.2305.79920623.34280-1.027405.028504.21740HepG2DDX6
SNHG7ENSG00000233016.2123.67910218.38120-0.820203.449402.42690HepG2EEF2
SNHG7ENSG00000233016.2367.71930201.873300.865105.291802.75330HepG2EIF3H
SNHG7ENSG00000233016.2451.55740661.74030-0.551402.313501.72660HepG2EIF4A3
SNHG7ENSG00000233016.2190.59200644.57850-1.757908.920807.72180HepG2EIF4B
SNHG7ENSG00000233016.2472.66410350.419900.431602.224701.48900HepG2EIF4G2
SNHG7ENSG00000233016.2473.95920587.29980-0.309301.867801.35320HepG2ETF1
SNHG7ENSG00000233016.2146.65810214.88650-0.551102.437501.36190HepG2FASTKD2
SNHG7ENSG00000233016.2155.63180316.36390-1.023405.821504.74590HepG2FIP1L1
SNHG7ENSG00000233016.2296.98130515.40690-0.795305.692804.57750HepG2FUBP3
SNHG7ENSG00000233016.2323.54680668.11440-1.046105.033204.12130HepG2FXR1
SNHG7ENSG00000233016.2211.40250619.53940-1.551208.352907.22860HepG2G3BP1
SNHG7ENSG00000233016.2397.50630658.02720-0.727203.153302.20130HepG2G3BP2
SNHG7ENSG00000233016.2434.41760337.837900.362701.931101.35530HepG2HNRNPL
SNHG7ENSG00000233016.2196.93840135.272900.541801.842601.31890HepG2HNRNPLL
SNHG7ENSG00000233016.2376.72590629.66480-0.741103.348802.61220HepG2IGF2BP2
SNHG7ENSG00000233016.2253.07730591.24950-1.224205.487904.12940HepG2IGF2BP3
SNHG7ENSG00000233016.2427.60120633.49130-0.567102.293901.39290HepG2KHSRP
SNHG7ENSG00000233016.2237.96440387.84160-0.704703.788402.81370HepG2LARP4
SNHG7ENSG00000233016.2268.64560672.01780-1.322806.786705.83250HepG2MATR3
SNHG7ENSG00000233016.2219.04490687.78850-1.650709.164008.05120HepG2NCBP2
SNHG7ENSG00000233016.2314.38660560.58610-0.8344010.111809.06870HepG2PCBP1
SNHG7ENSG00000233016.2289.51900187.877200.623804.099203.21960HepG2PPIL4
SNHG7ENSG00000233016.2264.30190174.207700.601303.680202.80010HepG2PRPF4
SNHG7ENSG00000233016.2211.73470570.38840-1.4297025.0327023.70110HepG2PTBP1
SNHG7ENSG00000233016.2272.85690351.00530-0.363301.841901.34200HepG2PUF60
SNHG7ENSG00000233016.2212.18530617.80650-1.5418027.3700025.70090HepG2QKI
SNHG7ENSG00000233016.2132.93170207.85760-0.644901.926401.32760HepG2RAVER1
SNHG7ENSG00000233016.2227.15900331.84460-0.546803.182902.26990HepG2RBM15
SNHG7ENSG00000233016.2275.88390490.87880-0.831308.444507.65440HepG2RBM22
SNHG7ENSG00000233016.2404.06680560.67570-0.472603.486302.73620HepG2RBM25
SNHG7ENSG00000233016.2281.59370634.81160-1.1727019.3963018.21620HepG2NELFE
SNHG7ENSG00000233016.2427.77810591.19710-0.466804.198803.46100HepG2RECQL
SNHG7ENSG00000233016.2109.70520172.49890-0.653002.580501.98540HepG2RPS19
SNHG7ENSG00000233016.2315.66660452.92980-0.520902.514601.75100HepG2RPS3A
SNHG7ENSG00000233016.298.77780181.78970-0.880002.831602.03680HepG2RRP9
SNHG7ENSG00000233016.2746.16380426.506500.806806.617904.61820HepG2SART3
SNHG7ENSG00000233016.2434.12780298.294500.541302.905302.21370HepG2SF3A3
SNHG7ENSG00000233016.2385.55680593.89990-0.623306.644205.79070HepG2SF3B4
SNHG7ENSG00000233016.2426.85810336.505700.343001.979601.36820HepG2SLBP
SNHG7ENSG00000233016.2393.02660202.946800.953403.933302.04250HepG2SLTM
SNHG7ENSG00000233016.2410.93520554.43810-0.432103.361002.82520HepG2SRFBP1
SNHG7ENSG00000233016.2185.22360619.88170-1.7427035.9448034.66680HepG2SRSF1
SNHG7ENSG00000233016.2197.32770346.53530-0.812407.337106.38510HepG2SRSF5
SNHG7ENSG00000233016.2222.15320504.28850-1.1827018.7663017.56330HepG2SRSF9
SNHG7ENSG00000233016.2308.12120481.39850-0.643706.300105.58410HepG2SSB
SNHG7ENSG00000233016.2292.27390394.13290-0.431402.632602.02250HepG2SUCLG1
SNHG7ENSG00000233016.2148.71970237.35210-0.674401.942901.36190HepG2SUPV3L1
SNHG7ENSG00000233016.2217.75560557.11500-1.3553022.2663020.89120HepG2TAF15
SNHG7ENSG00000233016.2275.62830511.97520-0.8933010.114908.53630HepG2TIA1
SNHG7ENSG00000233016.2191.06760270.59640-0.502101.988401.44630HepG2U2AF1
SNHG7ENSG00000233016.2242.39430362.89930-0.582202.722801.89230HepG2UBE2L3
SNHG7ENSG00000233016.2227.26900140.176000.697102.043801.39140HepG2UCHL5
SNHG7ENSG00000233016.2353.39810217.206100.702102.361301.43980HepG2UPF2
SNHG7ENSG00000233016.2194.68100271.90350-0.482002.423601.43190HepG2UTP18
SNHG7ENSG00000233016.2435.90180255.403800.771107.788806.86550HepG2UTP3
SNHG7ENSG00000233016.2632.88210359.984200.8139011.3902010.33320K562AGGF1
SNHG7ENSG00000233016.2628.55310374.589300.746604.716203.85580K562AKAP8L
SNHG7ENSG00000233016.21384.20300569.858301.2803018.9413017.57330K562AQR
SNHG7ENSG00000233016.2777.83110379.039501.0370019.7477018.15670K562DDX47
SNHG7ENSG00000233016.2374.19250469.48470-0.327301.983801.35670K562EIF2S2
SNHG7ENSG00000233016.2539.31570321.573300.745905.199403.72260K562EIF3D
SNHG7ENSG00000233016.2385.33290181.884801.0830010.959809.36520K562EIF3G
SNHG7ENSG00000233016.2810.84810345.175301.232005.012803.90670K562EIF4A3
SNHG7ENSG00000233016.2837.75400595.229900.493004.943103.70630K562EIF4G2
SNHG7ENSG00000233016.2502.70790358.967700.485803.842403.14650K562FXR1
SNHG7ENSG00000233016.2328.32050236.564500.472802.702701.57420K562GLRX3
SNHG7ENSG00000233016.2837.06240625.648100.419903.219102.40580K562GRSF1
SNHG7ENSG00000233016.2590.39770346.322300.769508.459106.67720K562HNRNPA1
SNHG7ENSG00000233016.2429.03710264.605800.697202.677201.48290K562HNRNPA2B1
SNHG7ENSG00000233016.2655.59330230.716901.5066023.7131022.03890K562HNRNPC
SNHG7ENSG00000233016.2582.54930397.500000.551304.497203.40600K562KIF1C
SNHG7ENSG00000233016.2509.76620288.135400.823008.562407.04450K562MAGOH
SNHG7ENSG00000233016.2434.31110248.711100.804208.157506.83840K562MTPAP
SNHG7ENSG00000233016.2461.37140312.129400.563702.907501.99910K562NAA15
SNHG7ENSG00000233016.2369.46330276.371500.418702.599401.87300K562NSUN2
SNHG7ENSG00000233016.2396.10540231.546300.774503.035901.98890K562PABPN1
SNHG7ENSG00000233016.2375.05290256.366800.548803.339302.26390K562PCBP2
SNHG7ENSG00000233016.2163.94690319.99840-0.964806.426605.15830K562PCBP3
SNHG7ENSG00000233016.2133.39160245.45290-0.879805.658504.51510K562POLR2G
SNHG7ENSG00000233016.2511.92750292.295800.808406.370305.23350K562PRPF8
SNHG7ENSG00000233016.2384.78190279.942500.458802.850902.17770K562PTBP1
SNHG7ENSG00000233016.2964.98120371.422801.3773023.4915021.92680K562PUS1
SNHG7ENSG00000233016.2579.20870361.951100.678207.342206.40890K562RBM15
SNHG7ENSG00000233016.2493.97830268.424400.879808.766107.14430K562RBM22
SNHG7ENSG00000233016.2445.08450297.712700.580103.025602.17100K562RPS19
SNHG7ENSG00000233016.2467.51830272.661900.777804.383403.37480K562SF3A3
SNHG7ENSG00000233016.2309.71930206.061600.587802.724901.87630K562SF3B4
SNHG7ENSG00000233016.2187.82830274.43850-0.547102.729202.02640K562SRSF1
SNHG7ENSG00000233016.2388.75390277.746500.485002.682301.98400K562TARDBP
SNHG7ENSG00000233016.2304.02020198.432800.615403.429302.53700K562U2AF2
SNHG7ENSG00000233016.2538.48370293.040100.8777011.137309.81590K562UPF1
SNHG7ENSG00000233016.2376.76920250.749200.587303.863402.82330K562WDR3
SNHG7ENSG00000233016.2441.25110260.722500.759008.242006.85440K562WDR43
SNHG7ENSG00000233016.2559.53710228.518701.291807.410104.52410K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNHG7 is not available on ENCORE database.





3 RBPs can affect the splicing of SNHG7 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNHG7ENSG00000233016.2chr9-139620762139620868139619506139619562139621497139621538-0.101000.000400.01836excludedK562PRPF8
SESNHG7ENSG00000233016.2chr9-139620762139620868139619506139619562139621497139621538-0.076000.000010.00031excludedK562AQR
SESNHG7ENSG00000233016.2chr9-139620762139620868139619506139619562139621497139621538-0.097000.000560.03314excludedK562EFTUD2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNHG7 is not avaliable on ENCORE database.